BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2451.p (528 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093607|ref|YP_001098682.1| NAD(P) transhydrogenase subunit... 667 0.0 >gi|134093607|ref|YP_001098682.1| NAD(P) transhydrogenase subunit alpha [Herminiimonas arsenicoxydans] Length = 532 Score = 667 bits (1722), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/535 (66%), Positives = 415/535 (77%), Gaps = 11/535 (2%) Query: 1 MALTVGIPKEIFPEEKRVAASPEMVAKLIALGFPVLMENQAGALANMPDEAFRAAGASIA 60 M+L +G+P+E FP EKRVA PE+V KLI LGF V +E+ AG AN D+ +RAAGA I Sbjct: 1 MSLVIGVPRESFPGEKRVATVPEVVEKLIKLGFSVSVESGAGDDANFSDDTYRAAGAQIV 60 Query: 61 ASPQQVWQAADLIFKVRAPSLAEVALMKEGSTLISFIWPAQNAELMAALAAKRATVLAMD 120 +W +D++FKVRAPS E+ L++EGSTLI FIWPAQN ELM LAAKR TVLAMD Sbjct: 61 QGAANLWSTSDIVFKVRAPSAEEIGLIREGSTLIGFIWPAQNPELMQQLAAKRVTVLAMD 120 Query: 121 CIPR-ISRAQKCDALSSMANIAGYRAVIEAANQFGRFFTGQITAAGKVPPAKVFVIGAGV 179 +PR +SRAQK DAL+S A ++GYRAVIEAAN FGRFF GQITAAGKVPPAKVF+ GAGV Sbjct: 121 SLPRTLSRAQKMDALTSTAGVSGYRAVIEAANAFGRFFNGQITAAGKVPPAKVFIAGAGV 180 Query: 180 AGLAALGTAVSLGAVVRANDTRQEVADQIKSMGAEFVGVNYVEEGSGGGGYAKVMSEGYQ 239 AGLAA+GT+ SLGA+VRANDTR EVADQ+ S+G EFV V+Y EEGSGGGGYAKVMSEG+Q Sbjct: 181 AGLAAIGTSASLGAIVRANDTRAEVADQVVSLGGEFVKVDYDEEGSGGGGYAKVMSEGFQ 240 Query: 240 QAQRQVFAEQAKDVDIIITTALIPGKPAPKLITSEMVQSMRPGSVIVDLAAEQGGNCELT 299 AQR+++A+QAK+ DIIITTALIPGKPAPKLIT+EMVQSM+PGSVIVD+AAEQGGNCELT Sbjct: 241 AAQREMYAQQAKECDIIITTALIPGKPAPKLITAEMVQSMKPGSVIVDMAAEQGGNCELT 300 Query: 300 VPGEVVVRHDVTIIGYTDLPSRLSKQSSTLYATNLLRLTEELC------KTKDGIILVNM 353 PG+VVV+H VTI+GYTDLPSRL KQ+STLY+TNLLRLTEELC KT DGII VNM Sbjct: 301 EPGKVVVKHGVTIVGYTDLPSRLPKQASTLYSTNLLRLTEELCKDAEGKKTTDGIINVNM 360 Query: 354 DDEMIRGATVLKDGTVTWPPPAIKPAVAPAKPAPNAPATAP-QAKAAPVKKPASRWGPVI 412 +DE IRG TV+K+G +TWPPP +K APA APA A + V P + Sbjct: 361 EDEAIRGLTVIKEGNITWPPPPLKQVAAPAAKPAAAPAPAHGHGPSTTVSSPKRVVTMFV 420 Query: 413 FGGLAAVLLWLVGSYAPTEFLEHFTVFILACFVGYMVVWNVTASLHTPLMSVTNAISSII 472 F A +L L+G APT FL H TVF+L CF+GYMVVWNVT +LHTPLMSVTN+ISSII Sbjct: 421 F---ATLLFALIGYGAPTAFLGHLTVFVLGCFIGYMVVWNVTPALHTPLMSVTNSISSII 477 Query: 473 AIGAMTQVSPALGTSGTPSSYLIFALAIAGIVLTAVNMFGGFAVTGRMLAMFRKQ 527 IGA+ QV+P L LI LA AGI LTA+NMFGGFAVT RML MFRK Sbjct: 478 VIGALVQVAPPLADGMARPEMLIKCLAAAGIALTAINMFGGFAVTRRMLDMFRKN 532 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.133 0.382 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 753,855 Number of extensions: 25210 Number of successful extensions: 117 Number of sequences better than 1.0e-08: 1 Number of HSP's gapped: 114 Number of HSP's successfully gapped: 1 Length of query: 528 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 442 Effective length of database: 716,977 Effective search space: 316903834 Effective search space used: 316903834 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)