BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2445.p (242 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein... 59 3e-10 gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding s... 54 9e-09 >gi|134095265|ref|YP_001100340.1| 3-oxoacyl-[acyl-carrier-protein] reductase [Herminiimonas arsenicoxydans] Length = 247 Score = 58.5 bits (140), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 59/199 (29%), Positives = 101/199 (50%), Gaps = 20/199 (10%) Query: 3 AIVTGHTRGLGAAIAAELMQREVAVLGLARRR------NETLAQQWPALLHQQVIDLADP 56 A+VTG +RG+G AIA L ++ V V+G A +E LA+ + V+D+ D Sbjct: 11 ALVTGASRGIGRAIAQALAKQGVKVIGTATSESGAAAISEYLAESGKGV----VLDVNDA 66 Query: 57 GQLLSWLDGDALSAFLADEAEVLLINNAATIQPSGALPHQCAQDIAQAVMLNVGAALILS 116 + ++ +D + F +L+NNA Q A+ + ++ + N+ + LS Sbjct: 67 ARSVALID-EIQKEF---GTVTILVNNAGITQDQLAMRMK-DEEWDSVIATNLTSVGRLS 121 Query: 117 -ARLATLAQARLGCECRILHLSSGAGRQAYPGWSVYGASKAALDHHARAVAQD-GTPGLR 174 A L + +A+ G RI++++S G G Y A+KA + +RA+A++ G+ + Sbjct: 122 RAVLRGMMKAKHG---RIINITSVVGSTGNAGQMNYAAAKAGVAGMSRALAREIGSRNIT 178 Query: 175 ICSVAPGVIDTDMQAELRD 193 + VAPG IDTDM L + Sbjct: 179 VNCVAPGFIDTDMTKTLSE 197 >gi|134095579|ref|YP_001100654.1| oxidoreductase NAD(P)-binding subunit [Herminiimonas arsenicoxydans] Length = 248 Score = 53.5 bits (127), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 53/187 (28%), Positives = 88/187 (47%), Gaps = 13/187 (6%) Query: 1 MKAIVTGHTRGLGAAIAAELMQREVAVLGLARRRN--ETLAQQWPALLHQQVIDLADPGQ 58 M ++TG + G GA +A + Q+ V+ RR++ + LA + A + +D+ D Sbjct: 1 MIVLITGASSGFGAEMARKFAQQGHKVIATGRRKDRLDDLAAELGAAVLTVAMDVTDKHS 60 Query: 59 LLSWLDGDALSAFLADEAEV-LLINNAATIQPSGALPHQCAQDIAQAVMLNVGAALILSA 117 + + LD + A+ E+ +LINNA G P Q A M+ +++ Sbjct: 61 ITAALD-----SLPAEWREIDVLINNAGLAL--GVAPAQTASLEQWETMIETNCKGLVTV 113 Query: 118 RLATLAQARLGCECRILHLSSGAGRQAYPGWSVYGASKAALDHHARAVAQD--GTPGLRI 175 L I+++ S AG AYPG +VYGA+KA + + D GT G+R Sbjct: 114 TRLVLPDMLKRNRGTIINIGSSAGAYAYPGANVYGATKAFVAQFTLNLRADLVGT-GVRA 172 Query: 176 CSVAPGV 182 ++APG+ Sbjct: 173 TNLAPGL 179 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.134 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 471,247 Number of extensions: 18671 Number of successful extensions: 79 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 79 Number of HSP's successfully gapped: 3 Length of query: 242 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 163 Effective length of database: 740,042 Effective search space: 120626846 Effective search space used: 120626846 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 127 (53.5 bits)