BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2444.p
         (254 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094060|ref|YP_001099135.1| IclR family transcriptional reg...    80   7e-17
gi|134095851|ref|YP_001100926.1| putative transcriptional regula...    60   8e-11

>gi|134094060|ref|YP_001099135.1| IclR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 245

 Score = 80.5 bits (197), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 65/226 (28%), Positives = 111/226 (49%), Gaps = 7/226 (3%)

Query: 26  VTELAKRSGNTKARAFRLLTTLEECGLVRRQLPMATYSLGYRALILGTAAQGQLSLVNVA 85
           + EL++ +G   + A R+L  L     V R  P A Y LG R L LG   + +LS+   A
Sbjct: 17  LKELSRVTGLHPSTAHRILNDLVLKRFVDRSEPGA-YRLGMRLLELGNIVKSRLSVREAA 75

Query: 86  RDILEDIGNECNESVLVRVRDGMDTVCVAW-WDAPHAIRVHSQLGDRRPLSAGASGKLLL 144
            D++  +  + N++V + VR   + + +   +     ++V   +G R PL   ++GKL L
Sbjct: 76  LDLMRHLHRKTNQTVNLSVRQNDEIIYIDRAFSERSGMQVVRAIGGRAPLHLTSTGKLFL 135

Query: 145 AY-APADVQAEILSGKLEKFTPNTIVKQTDLKKELKKILAEGFSISHSEKTADMVAVAAP 203
           +   P  VQA  +   L     N+I     L+ EL  + A G++  + E    +  +AA 
Sbjct: 136 SIDEPKMVQAYAIRTHLVGHNKNSITDLNRLENELSLVRAHGYARDNEELELGVRCMAAG 195

Query: 204 VRDSQGHVVASLSMTAPSSRVPKEKLDKYVKIITQAAARFSRLLGY 249
           + D  G ++A LS++AP+ R+ +E L+  ++     A   S  LGY
Sbjct: 196 IHDDTGKLIAGLSISAPADRLQEEWLEDLMR----TAREISVALGY 237


>gi|134095851|ref|YP_001100926.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 285

 Score = 60.5 bits (145), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 107/249 (42%), Gaps = 15/249 (6%)

Query: 7   AVSKAIELLFLVAEEGGNGV--TELAKRSGNTKARAFRLLTTLEECGLVRRQLPMATYSL 64
           ++ +A  +L  +A    +G+   +LA++    +    R+L  L   GLV +      Y L
Sbjct: 19  SIERAARILREIASYSAHGLRLVDLARQLNLKRTTIHRILMCLIREGLVMQHPTTLRYML 78

Query: 65  GYRALILGTAAQGQLSLVNVARDILEDIGNECNESVLVRVRDGMDTVCVAWWDAPHAIRV 124
           GY    LG  A  Q  L  +    LE I  +   +  + +R  +D + +A  D P   + 
Sbjct: 79  GYSLFELGLTAASQFKLREICEPCLERIAKKTGHTAFMTIRSELDAISIARAD-PDPTKP 137

Query: 125 HS----QLGDRRPLSAGASGKLLLAYAPADVQAEILSGKLEKFTPNTIVKQTDLKKELKK 180
                 +LG  RPL  GA    +L   P D    I+S    +  P   +    L +  ++
Sbjct: 138 MDEPAIELGVHRPLGVGAGSLAILISLPDDEIERIVSANARRLGPYGKLTVPLLLQLARE 197

Query: 181 ILAEGFSISHSEKTAD-MVAVAAPVRDSQGHVVASLSMTAPSSRV-PKEKLDKYVKIITQ 238
               G+S SH  +  D +  V   VR+S+G  + ++S+TA    + P+EK +     I  
Sbjct: 198 AQETGYS-SHDSRMLDGLSGVGILVRNSEGAPLGAISITAKGKILSPEEKRE-----IMT 251

Query: 239 AAARFSRLL 247
              R SR+L
Sbjct: 252 VLNRESRIL 260


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.131    0.366 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 419,727
Number of extensions: 15268
Number of successful extensions: 64
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 62
Number of HSP's successfully gapped: 2
Length of query: 254
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 174
Effective length of database: 736,747
Effective search space: 128193978
Effective search space used: 128193978
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 127 (53.5 bits)