BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2442.p (402 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas a... 118 5e-28 gi|134095723|ref|YP_001100798.1| putative porin transmembrane pr... 92 5e-20 gi|134096245|ref|YP_001101320.1| porin transmembrane protein [He... 79 5e-16 gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas a... 77 2e-15 >gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas arsenicoxydans] Length = 357 Score = 118 bits (296), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 106/306 (34%), Positives = 138/306 (45%), Gaps = 35/306 (11%) Query: 1 VKKSAIGLACLG-IVGTAYAQSSVEIYGVATAGLGYVNKVATTGTNTGSRV-GIDSGQYT 58 +KKS + LA LG G A AQSSV +YG+ G+ TG R+ G+ SG + Sbjct: 1 MKKSLLALAVLGAFAGAASAQSSVTVYGIVDMGI----TSQDTGAGANDRLNGVTSGNQS 56 Query: 59 QSRIGFRGAEDLGGGNKAEFVIEGGFTLDNGASAQ-NGAT-FGRRTTVGLSGDYGDVQLG 116 SRIGF+G EDLG G KA FV+E D G +Q +G T F R TVGLSG++G V LG Sbjct: 57 ASRIGFKGTEDLGNGLKANFVLEQTIAADTGVLSQVDGKTAFNRFATVGLSGNFGAVNLG 116 Query: 117 RR----KDYTDFIANQYSTASRMLPFTGKAHGNNLDRATGERANNMIYYTTPNYGGFQAN 172 R+ KD D I + + + P + L G R +N I YT+ +Y GF+ Sbjct: 117 RQVSAIKDAYDAI-DPFGDGGTIAPISAIFFNAALKGDNG-RISNSIKYTSNSYSGFKFG 174 Query: 173 LTYAFGEAAGSNSTGQSLGLGANYDNGPFGIGLAYWQSKKAATVGSVSTNTSSDQGAASN 232 YAFGE AG + GL Y NGP + Y S D A Sbjct: 175 AHYAFGEQAGRTGADSNYGLNLGYANGPLNVQFGYM---------------SGDDSTAGA 219 Query: 233 AGCNTATLGNAGDTCTKVWMLGTNYDIGPVTLRGTYSLVK-QPLVNASSGTAANFVRTVT 291 G ++ K+ LG YD G L Y K QP+ N++ V+ Sbjct: 220 PGFKPVK-----NSKDKMTFLGATYDFGVAKLHAAYGDSKNQPVAGNVDNKYRNYMLGVS 274 Query: 292 ATSGTA 297 A G A Sbjct: 275 AKVGAA 280 >gi|134095723|ref|YP_001100798.1| putative porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 392 Score = 92.0 bits (227), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 117/416 (28%), Positives = 170/416 (40%), Gaps = 66/416 (15%) Query: 12 GIVGTAYAQSSVEIYGVATAGLGYVNKVATTGTNTGSRVGIDSGQYTQSRIGFRGAEDLG 71 G++ A AQ+ V IYG+A + Y ++ S + SG SRIGF+G EDLG Sbjct: 18 GVLQNAGAQNGVTIYGIADVAMVY-----SSNQGGASNTYMRSGNLAGSRIGFKGTEDLG 72 Query: 72 GGNKAEFVIEGGFTLDNGASAQNGATFGRRTTVGLSGD-YGDVQLGRR-KDYTDFIANQY 129 GG +A F +E GF LD G + + F R+ VG++ YG + GR+ Y F+ Sbjct: 73 GGTQAIFQLESGFNLDTGEMSSSSTLFNRQAFVGINNTRYGALTAGRQYTPYYLFVGPIG 132 Query: 130 STASRMLPFTGK--AHGNNLD-RATGERANNMIYYTTPNYGGFQANLTYAFGEAAGSNST 186 T S TG AH ++D T R+NN I YT+P + G Q + FGE AG + Sbjct: 133 PTNS----LTGATGAHPGDIDGLDTTIRSNNSITYTSPVWNGLQVSALAGFGETAGDMGS 188 Query: 187 GQSLGLGANYDNGPFGIGLAYWQSKKAATVGSVSTNTSSDQGAASNAGCNTATLGNAGDT 246 G+++ YD + L Y + + G V + +S A NT+ + N + Sbjct: 189 GRTISAAIKYDINNWNFALGYQRLNNSNNPGGVWSPNAS-------ANFNTSPVNNGYLS 241 Query: 247 CTKVWML--GTNYDIGPVTLRGTYSLVKQPLVNASSGTAANFVRTVTATSGTAAFTAGGI 304 L Y +G V + AN R +G + FT Sbjct: 242 ADSAQYLAGAARYTMGKVIV------------------GANASRVEYRPNGNSLFT---- 279 Query: 305 NNSRADIYDVGADYKMGNWLFKGSVIYSRYDFV---GASNKGKLTTFVLGADYSLSKRSL 361 + D + Y+M F SV YS G S+ K L YS SKR+ Sbjct: 280 QKATFDTLGLLTGYQMTPVFFV-SVGYSYTKEKAANGISDPAKYHQLALEQTYSFSKRTA 338 Query: 362 LYAMLA---------------NMRASDMYSPGLTSNGAPGADKSQNALALGILHRF 402 +Y + A +RA + G + NG P +Q +GI H F Sbjct: 339 IYFLEAYQVAKGNTLGLGGSGPVRAVAVV--GDSQNGTPSDGANQAVFMVGIRHSF 392 >gi|134096245|ref|YP_001101320.1| porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 394 Score = 78.6 bits (192), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 117/430 (27%), Positives = 172/430 (40%), Gaps = 105/430 (24%) Query: 17 AYAQSSVEIYGVATAGLGYVNKVATTGTNTGSRVGIDSGQYTQSRIGFRGAEDLGGGNKA 76 A AQSSV+ G A + + +G + GS+ ++S S G +G E+LGGG +A Sbjct: 26 ALAQSSVQFVGTVDA---FAGSLKNSG-DAGSKSVVNSSGMETSWWGVKGTENLGGGLQA 81 Query: 77 EFVIEGGFTLDNGASAQ--NGATFGRRTTVGLSGDYGDVQLGRRKDYTDFIANQYSTASR 134 +F + F D GA + + F R VGLSG +G V +GR +A + Sbjct: 82 QFALSSFFRPDTGAQGRFDSDTMFSRDAHVGLSGSFGRVSVGRD------LAPNFIPTLT 135 Query: 135 MLPFTGKAHGNNLDRATGERA------------------NNMIYYTTPNYGGFQANLTYA 176 PF G + L+ T + +N I Y P GGF +L + Sbjct: 136 FSPFGGSFAFSPLELHTQTPSGSYRGQVWSPTVAGDTGWSNEIMYVMPKLGGFTTSLFFQ 195 Query: 177 FGEAAGSNSTGQSLGLGANYDNGPFGIGLAYWQSKKAATVGSVSTNTSSDQGAASNAGCN 236 FGE AG + G Y+ GP G AY+QS K + + TS D + N Sbjct: 196 FGEQAGKPGK-NNYGANTMYEQGPLSFG-AYFQSVKVNN--PLDSVTSGDSRVFTFTPYN 251 Query: 237 TATLGNAGDTCT------KVWMLGTNYDIGPVTLRGTYSLVKQPLVNASSGTAANFVRTV 290 AT G T T W +G YD+ + L GT + L+ Sbjct: 252 QAT----GATYTLAASRNDTWFVGGAYDLQFMKLFGTLNYSTNRLI-------------- 293 Query: 291 TATSGTAAFTAGGINNSRADI----YDVGADYKMGNWLFKGSVIYSRY--------DFV- 337 G N+S+ D+ +G +G KGSV++S DF Sbjct: 294 -----------GIANDSQYDLKSNTVQLGTSVPVG----KGSVLFSWARTNVKADGDFSA 338 Query: 338 ---GASNKGKLT--TFVLGADYSLSKRSLLYAMLANMRASDMYSPGLTSNGAPGADKSQN 392 GA K + T LG DY LSKR+ +Y++++ + +D S G+ Sbjct: 339 VLGGAGGKSSIIRNTASLGYDYFLSKRTDVYSVVSYDKLTDQ-STGI------------- 384 Query: 393 ALALGILHRF 402 +L +GI RF Sbjct: 385 SLGVGIRQRF 394 >gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas arsenicoxydans] Length = 363 Score = 76.6 bits (187), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 67/229 (29%), Positives = 112/229 (48%), Gaps = 33/229 (14%) Query: 19 AQSSVEIYGVATAGLGYVNKVATTGTNTGSRVGIDSGQYTQSRIGFRGAEDLGGGNKAEF 78 A SS+ +YG +G+ +V +G +T +++G +G+Y +R+G +G E+LGGG F Sbjct: 30 APSSISMYGTIDSGIRHVTNTTASGGST-TKLG-SNGEYYNNRLGIKGMENLGGGLNMHF 87 Query: 79 VIEGGF-----TLDNGASAQNGATFGRRTTVGLSGDYGDVQLGRRKD--------YTDFI 125 +E GF LDN A+ F R +++G++G +G + GR+ Y F Sbjct: 88 HLESGFNTGTGELDNKAN----RLFNRISSIGIAGSFGSLDFGRQPSVACKAVYAYEPF- 142 Query: 126 ANQYSTASRMLPFTGKAHGNNLDRAT-------GERANNMIYYTTPNYGGFQANLTYAFG 178 QY ++P G GN R + G R +N Y +G F A+ Y G Sbjct: 143 --QYRYV-HIIPLAGAVAGNLDGRVSRPFGTVDGPRFSNGAQYFG-KFGSFTASAEYIMG 198 Query: 179 EAAGSNSTGQSLGLGANYDNGPFGIGLAYWQSKKAATVGSVSTNTSSDQ 227 E GSN + +G Y++G F +G AY +++ +G+V+ + +Q Sbjct: 199 EVPGSNRNQAAKAVGLVYNDGTFTVGGAY--TRQNPNIGTVAASDYREQ 245 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.314 0.131 0.380 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 771,940 Number of extensions: 33069 Number of successful extensions: 78 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 66 Number of HSP's successfully gapped: 4 Length of query: 402 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 318 Effective length of database: 723,567 Effective search space: 230094306 Effective search space used: 230094306 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 130 (54.7 bits)