BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2441.p
         (251 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094060|ref|YP_001099135.1| IclR family transcriptional reg...    70   9e-14
gi|134095851|ref|YP_001100926.1| putative transcriptional regula...    55   4e-09

>gi|134094060|ref|YP_001099135.1| IclR family transcriptional
           regulator [Herminiimonas arsenicoxydans]
          Length = 245

 Score = 70.5 bits (171), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/241 (25%), Positives = 119/241 (49%), Gaps = 8/241 (3%)

Query: 13  LGLLLLVAQCPG-LGVTELSLRSGMTKARAFRMLYTLEKNGLVCRDNQAPIYGLGYNALY 71
           + LL  +A  P  + + ELS  +G+  + A R+L  L     V R ++   Y LG   L 
Sbjct: 2   VSLLDALATYPDPVSLKELSRVTGLHPSTAHRILNDLVLKRFVDR-SEPGAYRLGMRLLE 60

Query: 72  LGVAAEGQISLARLGKKYLRQIGIACNESVQMRIRDGLESVCIAR-WESFEPIRVQTQPG 130
           LG   + ++S+       +R +    N++V + +R   E + I R +     ++V    G
Sbjct: 61  LGNIVKSRLSVREAALDLMRHLHRKTNQTVNLSVRQNDEIIYIDRAFSERSGMQVVRAIG 120

Query: 131 SRRPLYVGASGKVLLAY-APREIQDHVLRTERKRFTSATLVNRSSLKQAIAKVLKTGHAV 189
            R PL++ ++GK+ L+   P+ +Q + +RT        ++ + + L+  ++ V   G+A 
Sbjct: 121 GRAPLHLTSTGKLFLSIDEPKMVQAYAIRTHLVGHNKNSITDLNRLENELSLVRAHGYAR 180

Query: 190 SYGEMSADSVAIAAPVFNAKAEVMAALSVAGPASRIRDEDVAATAGMLREAARQLSMNLG 249
              E+      +AA + +   +++A LS++ PA R+++E +      L   AR++S+ LG
Sbjct: 181 DNEELELGVRCMAAGIHDDTGKLIAGLSISAPADRLQEEWLED----LMRTAREISVALG 236

Query: 250 Y 250
           Y
Sbjct: 237 Y 237


>gi|134095851|ref|YP_001100926.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 285

 Score = 55.1 bits (131), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 52/225 (23%), Positives = 95/225 (42%), Gaps = 5/225 (2%)

Query: 24  GLGVTELSLRSGMTKARAFRMLYTLEKNGLVCRDNQAPIYGLGYNALYLGVAAEGQISLA 83
           GL + +L+ +  + +    R+L  L + GLV +      Y LGY+   LG+ A  Q  L 
Sbjct: 37  GLRLVDLARQLNLKRTTIHRILMCLIREGLVMQHPTTLRYMLGYSLFELGLTAASQFKLR 96

Query: 84  RLGKKYLRQIGIACNESVQMRIRDGLESVCIARWESFEPIRVQTQP----GSRRPLYVGA 139
            + +  L +I      +  M IR  L+++ IAR +  +P +   +P    G  RPL VGA
Sbjct: 97  EICEPCLERIAKKTGHTAFMTIRSELDAISIARADP-DPTKPMDEPAIELGVHRPLGVGA 155

Query: 140 SGKVLLAYAPREIQDHVLRTERKRFTSATLVNRSSLKQAIAKVLKTGHAVSYGEMSADSV 199
               +L   P +  + ++    +R      +    L Q   +  +TG++     M     
Sbjct: 156 GSLAILISLPDDEIERIVSANARRLGPYGKLTVPLLLQLAREAQETGYSSHDSRMLDGLS 215

Query: 200 AIAAPVFNAKAEVMAALSVAGPASRIRDEDVAATAGMLREAARQL 244
            +   V N++   + A+S+      +  E+      +L   +R L
Sbjct: 216 GVGILVRNSEGAPLGAISITAKGKILSPEEKREIMTVLNRESRIL 260


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 426,226
Number of extensions: 15791
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 2
Length of query: 251
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 172
Effective length of database: 740,042
Effective search space: 127287224
Effective search space used: 127287224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)