BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2440.p
         (525 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096447|ref|YP_001101522.1| putative dipeptide transport bi...   379   e-106
gi|134095504|ref|YP_001100579.1| oligopeptide ABC transporter pe...    64   3e-11

>gi|134096447|ref|YP_001101522.1| putative dipeptide transport
           binding transmembrane protein [Herminiimonas
           arsenicoxydans]
          Length = 528

 Score =  379 bits (972), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/530 (41%), Positives = 309/530 (58%), Gaps = 19/530 (3%)

Query: 1   MFKVVRKVFAAACIVVGLL--GTVAQ----AAELKIGFKAEITSADPHVLNSA-NRNIWA 53
           MF   R+  +A  ++  L   G +A     AA+LKIG  A+++S DPH LN A N    +
Sbjct: 1   MFGFKREKLSALALMGALAWSGNLASHAAFAADLKIGLSADVSSLDPHYLNIAPNVTFSS 60

Query: 54  HVYDSLVAQDHQLRPKPSLALSWRMINPTTWEFKLRPDVKFHDGQTMTAEDVKYSIERAM 113
           H++D+LV  D   +  P LA SWR ++ TTWEFKLR DVKFHDG   TA+DV +S++R  
Sbjct: 61  HIFDALVNVDANGKLVPGLATSWRAVDATTWEFKLRRDVKFHDGSPFTADDVIFSLDRPA 120

Query: 114 NL-SGPRTFRSYLREVSAISVSGPLTVQVKTKHVSPTLPDNLGLIAILPKSLGEHVSEES 172
            L S P  F +Y +++ A  +  P TV++ T      L  ++  + I+ K   E  S + 
Sbjct: 121 KLTSSPGPFTAYTKQIVAKKIVDPYTVRLMTAAPYGPLALDMSTVFIVSKKAAEKASTDD 180

Query: 173 FANGKSAIGTGPYRFGSWLHGQKLVLNKNSSYWGEKEPWDSVSFQFIPREPARAAALLSG 232
           F NGK+ IGTGPY+F S+  G ++ + +N  YWG K  WD V+F+ I     R AALLSG
Sbjct: 181 FNNGKALIGTGPYKFLSFKRGDRIEVTRNDQYWGGKSDWDKVTFRIITNSAPRLAALLSG 240

Query: 233 SVDIINDI-TANMER--SLRAFKLVSVTSYMLNYLALDQFRDISPFVRDVTGAPLKKNPM 289
            VD I  + TA++ R  S   F      S+   +  LDQ    S +V D +G PL  NP+
Sbjct: 241 DVDAIEGVPTADLSRLKSNAKFSFAQKISWRTIFWELDQSPGASRYVTDKSGKPLPNNPL 300

Query: 290 KDLKVRQAMMMAINRDGIIKYLMKDDATAAQQLVPKGFFGYDPELKLPGYDAAKARELLA 349
            D++VRQAM  AINR  +++  M+  A  A  +V  G FGY+  LK+  YD   A++LLA
Sbjct: 301 HDVRVRQAMSKAINRQALVERTMEGLAVPASNIVSPGIFGYNDALKVEVYDPEGAKKLLA 360

Query: 350 QAGYPQGFQLTLHCPNNRYVNDARLCEAVAQQWSQVGIRTDVATMPYSVFQTRAFGSGAN 409
           QAGYP GF LT+H PN+RY+ND ++ + VAQ W+++GI+T VAT+P SV+  +A      
Sbjct: 361 QAGYPHGFALTIHGPNDRYINDEQVVQTVAQFWNRIGIQTKVATLPLSVYFAKARAG--- 417

Query: 410 GEPEFSAFLVGNGAVTGDSLTGLVSIIHSYNAATSLGVSNYGRYSNKEVDALIERAAGTT 469
              EFS  L+G G + GD   GL +++ + N  T  G  N+G+YSN  VD LI  +  + 
Sbjct: 418 ---EFSVSLLGWGTLAGD--FGLRTLVGTPNVETGWGSWNWGKYSNPAVDKLIASSLSSV 472

Query: 470 DDAAREDLQRQASRLALTDVAIIPLQHLNAFWAMKQSLVLTPRADGFTMA 519
           D   R    ++A+ LAL D A++PL H  A WAM++ L  T R D FT A
Sbjct: 473 DQGKRVAFAKEAAALALKDYAVVPLHHQYATWAMRKGLKYTARTDEFTFA 522


>gi|134095504|ref|YP_001100579.1| oligopeptide ABC transporter
           periplasmic substrate-binding protein [Herminiimonas
           arsenicoxydans]
          Length = 599

 Score = 63.5 bits (153), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 55/226 (24%), Positives = 100/226 (44%), Gaps = 16/226 (7%)

Query: 86  FKLRPDVKFHDGQTMTAEDVKYSIERAMNLSGPRTFRSYLREVSAISVSGPLTVQVKTKH 145
           F+L P  +F++G  + A DVKYS +  +    P+ F+S   EV    V    TV+   K 
Sbjct: 119 FRLNPRARFNNGDPVLAADVKYSFDTLIAKGAPQ-FKSIFAEVKQCVVLNERTVRFDFKS 177

Query: 146 VSPTLPDNLGLIAILPKSLGEHVSEESFANGKSAIGTGPYRFGSWLHGQKLVLNKNSSYW 205
           ++  LP  +G + +  +        +        I TGPY    +  G+ +    N  YW
Sbjct: 178 LNHELPLIVGGVPVFSRKWAAGTDFDQI-QLTPPIATGPYLIDRYDSGRAISYKLNPGYW 236

Query: 206 GEKEP-------WDSVSFQFIPREPARAAALLSGSVDIINDITA-NMERSLRAFKLVSVT 257
           G   P       +  ++++F   + AR  A  +G  D++ + +A N  RS +  K  S  
Sbjct: 237 GTDIPSRKGMFNFGRINYRFYKDDVARLEAFKAGEFDLVVEYSAKNWARSYKGPKF-SSG 295

Query: 258 SYMLNYLALDQFRDISPFVRDVTGAPLKKNPMKDLKVRQAMMMAIN 303
             +   L       +  FV +     L++   +D++VR+A+ +A++
Sbjct: 296 EIIKRELTHSNGAGMQGFVMN-----LRRPQFQDVRVRRALDLALD 336


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,004,977
Number of extensions: 41283
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 108
Number of HSP's successfully gapped: 2
Length of query: 525
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 439
Effective length of database: 716,977
Effective search space: 314752903
Effective search space used: 314752903
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 131 (55.1 bits)