BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2439.p
         (320 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096446|ref|YP_001101521.1| peptide ABC transporter membran...   365   e-102
gi|134095503|ref|YP_001100578.1| oligopeptide ABC transporter me...   119   3e-28

>gi|134096446|ref|YP_001101521.1| peptide ABC transporter membrane
           protein [Herminiimonas arsenicoxydans]
          Length = 307

 Score =  365 bits (936), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 175/305 (57%), Positives = 237/305 (77%)

Query: 16  MSILAFVGINLVGNPIHLLVAPDAPLEEIQRASHALGLDLPMYQQYLRFVSNALHGDLGN 75
           MS+L F+G+  +GNPI +L++PDA   E  R   A GLD P++QQY  F+  AL GDLG 
Sbjct: 1   MSLLVFIGVYAIGNPIDMLISPDADQLERARTIAAFGLDKPLWQQYFIFIQQALSGDLGR 60

Query: 76  SFVFNQPAIGLILERMPATFELAVAALLLSAVIGIPLGMWSGLRPGSRVHKLAMGFSVLG 135
           SF F  PA+ LILER+PAT ELA+ A+L++ V+GIPLG+W+GLRP S   K  M  S+LG
Sbjct: 61  SFSFGTPALALILERLPATLELAIGAILIAIVLGIPLGLWAGLRPHSWSGKSIMAISILG 120

Query: 136 VTVPVFWLGLILILVFSVNLGWLPSGGRGPTTSLLGVQVSFLSWEGLKYIVLPACTLALH 195
            ++P FW+GL+LI+VF+V LGWLPSGGRG T+ L GV VSFL+ +GL++++LPA  LAL 
Sbjct: 121 FSLPTFWVGLMLIMVFAVQLGWLPSGGRGETSLLFGVPVSFLTLDGLQHLLLPAFNLALF 180

Query: 196 NIALVMRMTEAGTREVAVQEYVKFARAKGVGAVRLMMRHIAPNVMIPIVTVMGIEFGHLI 255
           NIALV+R+T AG +E  +Q+YVKFARAKGV   R++  H+  N++IPIVTV+ ++FG +I
Sbjct: 181 NIALVIRLTRAGAQEALLQDYVKFARAKGVRNSRIIGVHVLKNILIPIVTVIALQFGSII 240

Query: 256 AFSLITETIFAWPGMGKLIIDSVLQLDRPVVVAYLMVVLLLYVVINFVVDVLYLILDPRL 315
           AF+++TE++FAWPGMGKLIIDS+  LDRPV+VAYLM+V+ L+++IN +VDV Y +LDPR+
Sbjct: 241 AFAIVTESVFAWPGMGKLIIDSIRVLDRPVIVAYLMLVVALFILINLIVDVAYSLLDPRV 300

Query: 316 RTKSA 320
           R   A
Sbjct: 301 RLTDA 305


>gi|134095503|ref|YP_001100578.1| oligopeptide ABC transporter
           membrane protein [Herminiimonas arsenicoxydans]
          Length = 339

 Score =  119 bits (297), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 84/287 (29%), Positives = 148/287 (51%), Gaps = 16/287 (5%)

Query: 42  EEIQRASHALGLDLPMYQQYLRFVSNALHGDLGNSFVFNQPAIGLILERMPATFELAVAA 101
           E +       G D P  +++ + +      DLG SF  ++    L++ ++P +  L +  
Sbjct: 57  ERVAEIKALYGFDKPASERFWQMLKGFATFDLGKSFYHHKDVWDLVVSKLPVSITLGLWT 116

Query: 102 LLLSAVIGIPLGMWSGLRPGSRVHKLAMGFSVLGVTVPVFWLGLILILVFSVN--LGWLP 159
             L+  I +PLG+   +R GSR   +     ++G ++P F LG+ L+++F     + W P
Sbjct: 117 FFLTYFISVPLGIAKAVREGSRFDAITSMMVLVGYSIPGFILGVFLLVMFGGGSFVQWFP 176

Query: 160 SGGRGPTT------SLLGVQVSFLSWEGLKYIVLPACTLALHNIALVMRMTEAGTREVAV 213
              RG T+      SLLG  + +L W    +I LP       + A++  +T+    +   
Sbjct: 177 L--RGLTSDDWEQLSLLGKVLDYL-W----HITLPVTASVAGSFAVMTMLTKNTFLDEIR 229

Query: 214 QEYVKFARAKGVGAVRLMMRHIAPNVMIPIVTVMGIEF-GHLIAFSLITETIFAWPGMGK 272
           ++YV  ARAKG+    ++ +H+  N +IP+VT     F G   A SL+ ET+F+  G+G 
Sbjct: 230 KQYVLTARAKGLSENAVLYKHVFRNALIPLVTGFPAAFIGAFFAGSLLIETLFSLDGLGL 289

Query: 273 LIIDSVLQLDRPVVVAYLMVVLLLYVVINFVVDVLYLILDPRLRTKS 319
           L  +SV++ D PVV+  L +  L+ +V+  + D+ Y+  DPRL+ +S
Sbjct: 290 LSYESVIRRDYPVVMGTLYLFTLIGLVVKLLGDLCYVWADPRLQFES 336


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.329    0.144    0.430 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 576,794
Number of extensions: 24073
Number of successful extensions: 137
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 3
Length of query: 320
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 238
Effective length of database: 730,157
Effective search space: 173777366
Effective search space used: 173777366
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 129 (54.3 bits)