BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2437.p (319 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter AT... 381 e-107 gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 212 2e-56 gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter AT... 191 4e-50 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 110 8e-26 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 105 4e-24 >gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 321 Score = 381 bits (978), Expect = e-107, Method: Compositional matrix adjust. Identities = 181/314 (57%), Positives = 230/314 (73%) Query: 6 VRNLVTQFHTGAGVAKALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLIDAPGRISG 65 ++NL F GV KA++DVSF++ G+++G+VGESGSGKS+TA+S+M LIDAPG+I Sbjct: 1 MQNLQMHFTAREGVVKAVEDVSFSVAPGQIMGLVGESGSGKSMTAYSIMGLIDAPGKIVA 60 Query: 66 GEIIFKGENLREASAKRWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGETIAIHRKASRK 125 G+I+ K ++LR S + ++RG+RIAM+FQDPMM+LNPV+RI Q+ E + H+ + Sbjct: 61 GKILLKDQDLRALSPEAMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDVGKA 120 Query: 126 EIETRVCDALRRVGIPAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLIIADEPTTALD 185 DAL RVGI +P+ER+ YPH+ SGGMRQRVAIA A++N PDLII DEPTTALD Sbjct: 121 TARAMARDALVRVGIASPDERLLAYPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTALD 180 Query: 186 VTIQAQILYEMKQLARESGTALIWITHDISVVKDLADDLCVMYAGRIIERGPVQQVIQQP 245 VTIQ QILYEM++L RESGTALIWITHD+SV+ LAD +CVMYAG+I+E G VQ+V++QP Sbjct: 181 VTIQGQILYEMQKLCRESGTALIWITHDLSVIAGLADAVCVMYAGKIVESGSVQEVLEQP 240 Query: 246 LHPYTRGLIDSLPQAEYQGKRLYSIPGATPPLLRLPPGCAFAPRCSRAERACQTIPPVVA 305 HPYT GLI S P G L IPG TP LL LP GCAF RC RA C+ PP+ Sbjct: 241 QHPYTHGLIASSPSRNLPGLPLRQIPGMTPSLLNLPSGCAFRTRCERATAVCENTPPLSI 300 Query: 306 AGGREHRCFYPLSA 319 G R RCF+P+SA Sbjct: 301 DGARTLRCFHPISA 314 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 212 bits (539), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 110/259 (42%), Positives = 160/259 (61%), Gaps = 6/259 (2%) Query: 1 MALLEVRNLVTQFHTGAGVAKALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLIDAP 60 M LLE++NL F T +K ++DVSF++ G+ +VGESGSGK+VTA S++ L Sbjct: 1 MNLLEIQNLQVSFDT----SKVVNDVSFSIAAGEKFALVGESGSGKTVTALSILRLNQDA 56 Query: 61 GRISGGEIIFKGENLREASAKRWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGETIAIHR 120 G I+F+G+++ + S +RG +AM+FQ+PM +LNP+ IG Q+ E + +H Sbjct: 57 AY--AGRILFEGQDILQRSEAAMRAVRGKDVAMIFQEPMTALNPLFTIGNQIAEGLMLHE 114 Query: 121 KASRKEIETRVCDALRRVGIPAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLIIADEP 180 S + R + L + GIP P+ R YPH++SGG RQR IA A+ P L+IADEP Sbjct: 115 GLSARIAALRAIELLDKTGIPEPQRRALSYPHQLSGGQRQRAMIAMALACKPKLLIADEP 174 Query: 181 TTALDVTIQAQILYEMKQLARESGTALIWITHDISVVKDLADDLCVMYAGRIIERGPVQQ 240 TTALDVTIQ QI+ + QL RE A++ ITHD+++V+ AD + VM G ++E ++ Sbjct: 175 TTALDVTIQVQIVELLNQLQREENMAVLMITHDLNLVRHFADRVGVMEKGCLVEVAATRE 234 Query: 241 VIQQPLHPYTRGLIDSLPQ 259 + P YTR L+ S PQ Sbjct: 235 LFTAPRETYTRKLLASQPQ 253 Score = 159 bits (402), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 99/234 (42%), Positives = 146/234 (62%), Gaps = 7/234 (2%) Query: 22 ALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLIDAPGRISGGEIIFKGENLREASAK 81 A+DDVS + G+ LGIVGESGSGK+ +L+ L A R+SG I F G+ L + Sbjct: 290 AVDDVSVQVRPGETLGIVGESGSGKTTLGLALLRLSSA--RVSG-TIAFDGKPLNAMQSD 346 Query: 82 RWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGETIAIHR-KASRKEIETRVCDALRRVGI 140 LR R+ +VFQDP SL+P I +GE +A+H+ + I V DAL VG+ Sbjct: 347 ALRPLRA-RMQIVFQDPFASLSPRRTIEQIVGEGLALHQPQLGAAGIRKAVADALLEVGL 405 Query: 141 PAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLIIADEPTTALDVTIQAQILYEMKQLA 200 P P+ R YPHE SGG RQR+AIA ++ PDL++ DEPT++LDV++Q Q+L + +L Sbjct: 406 P-PDIMAR-YPHEFSGGQRQRIAIARVLVLKPDLVLLDEPTSSLDVSVQQQVLQLLLELQ 463 Query: 201 RESGTALIWITHDISVVKDLADDLCVMYAGRIIERGPVQQVIQQPLHPYTRGLI 254 ++ A I+I+HD++V++ +A + VM G+++E G Q V+ QP YT+ L+ Sbjct: 464 KKYELAYIFISHDLAVIRAMAHRVMVMKDGKVVESGMTQAVLSQPTEAYTQRLL 517 >gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 336 Score = 191 bits (485), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 113/292 (38%), Positives = 160/292 (54%), Gaps = 13/292 (4%) Query: 16 GAGVAKALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLIDAPGRISGGEIIFKGENL 75 A V A+D V+ T+ G+V+G+VGESG GKS + L +S G ++KG NL Sbjct: 37 SAEVVHAVDQVTLTIHAGEVVGLVGESGCGKSTLGRMAVGL----HTLSSGSRLWKGVNL 92 Query: 76 REASA--KRWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGETIAIHRKASRKEIETRVCD 133 +SA +R QL + M+FQDP SLNP MRI +GE H E V Sbjct: 93 EVSSAAERRQQQLG---MQMIFQDPYASLNPRMRIQDVIGEAPVAHGMVPASEQTEYVAR 149 Query: 134 ALRRVGI-PAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLIIADEPTTALDVTIQAQI 192 L+ VG+ PA R +PH+ SGG R R+ IA A+ P+L++ DE ALDV+IQAQ+ Sbjct: 150 LLQTVGLDPALARR---FPHQFSGGQRARIGIARALAVKPELLVCDEAVAALDVSIQAQV 206 Query: 193 LYEMKQLARESGTALIWITHDISVVKDLADDLCVMYAGRIIERGPVQQVIQQPLHPYTRG 252 L +L E ++I+HD+ VV+ ++D + +MY GRI+E P ++ +P HPYT Sbjct: 207 LNLFIKLRDELNLTYLFISHDLGVVRHVSDRVLIMYLGRIVESSPTAELFARPNHPYTVA 266 Query: 253 LIDSLPQAEYQGKRLYSIPGATPPLLRLPPGCAFAPRCSRAERACQTIPPVV 304 L+ S P+ E + Y++ G P L P GC F PRC A C P++ Sbjct: 267 LLASAPRLEVKKIDFYAVKGEIPSPLHPPSGCHFHPRCPHAMPRCSVEQPLL 318 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 110 bits (275), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 122/232 (52%), Gaps = 20/232 (8%) Query: 1 MALLEVRNLVTQFHTGAGVAKALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLIDAP 60 MALLE+RNL +F G +D++S ++E G+ ++G SG GK+ +L+ +I Sbjct: 1 MALLEIRNLTRRF----GDNTVVDNISLSIEAGEFFTLLGPSGCGKT----TLLRMIAGF 52 Query: 61 GRISGGEIIFKGENLREASAKRWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGETIAIHR 120 G+I+ G +L ++ + VFQ+ +L P M + + + + Sbjct: 53 DEPDAGKILLDGVDLTGVPPEQRV------VRTVFQN--YALFPHMTVAGNIAFPLEMA- 103 Query: 121 KASRKEIETRVCDALRRVGIPAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLIIADEP 180 + EI+ +V +AL V + R YPHE+SGG RQRV+IA A++ P L++ DEP Sbjct: 104 NTPKSEIKQKVDEALEDVRLTGFAAR---YPHELSGGQRQRVSIARALVTRPKLLLLDEP 160 Query: 181 TTALDVTIQAQILYEMKQLARESGTALIWITHDISVVKDLADDLCVMYAGRI 232 +ALD ++ Q+ E+ L +E G +++THD + L+ + VM G I Sbjct: 161 LSALDAQLREQMQIELINLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNI 212 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 105 bits (261), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 73/266 (27%), Positives = 137/266 (51%), Gaps = 24/266 (9%) Query: 4 LEVRNLVTQFHTGAGVAKALDDVSFTLEKGKVLGIVGESGSGKSVTAFSLMNLIDAPGRI 63 L + ++ + G + + + +SF L++G++ ++G+SG GK+ +++ I + Sbjct: 15 LSLESIRVGYRLGQQMHEIVHSLSFALQRGQIGCLLGQSGCGKT----TVLRAIAGFEPL 70 Query: 64 SGGEIIFKGENLREASAKRWSQLRGDRIAMVFQDPMMSLNPVMRIGAQLGETIAIHRKAS 123 + G I G+ + A + R +I +VFQD +L P + + +G + RK + Sbjct: 71 TEGSITLGGKEISNAHFTATPETR--QIGVVFQD--YALFPHLSVADNVGFGL---RKLA 123 Query: 124 RKEIETRVCDALRRVGIPAPEERMRVYPHEMSGGMRQRVAIANAIINHPDLIIADEPTTA 183 E + R+ L VG+ + ++ +PHE+SGG +QRVA+A A+ PDL++ DEP + Sbjct: 124 APERQARIAALLTLVGLASQGKK---FPHELSGGQQQRVALARALAPQPDLLLLDEPFSN 180 Query: 184 LDVTIQAQILYEMKQLARESGTALIWITHDISVVKDLADDLCVMYAGRIIERGPVQQVIQ 243 LDV ++ ++ E++ + +E GT + +THD +AD + VM G I++ + Sbjct: 181 LDVDLRERLASEVRDILKEVGTTAVLVTHDQHEAFAIADQIGVMQDGVIVQWDSAYNLYH 240 Query: 244 QP----------LHPYTRGLIDSLPQ 259 +P L +T G+ID Q Sbjct: 241 RPANRFVADFIGLGVFTPGIIDQQTQ 266 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.137 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 622,302 Number of extensions: 25624 Number of successful extensions: 225 Number of sequences better than 1.0e-08: 39 Number of HSP's gapped: 181 Number of HSP's successfully gapped: 41 Length of query: 319 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 237 Effective length of database: 730,157 Effective search space: 173047209 Effective search space used: 173047209 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)