BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2436.p (329 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter AT... 379 e-107 gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter AT... 199 2e-52 gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter AT... 175 2e-45 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 121 5e-29 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 119 2e-28 >gi|134096443|ref|YP_001101518.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 336 Score = 379 bits (974), Expect = e-107, Method: Compositional matrix adjust. Identities = 185/326 (56%), Positives = 239/326 (73%), Gaps = 5/326 (1%) Query: 6 MLTTNELSKSFSLKSSGLTRVMGKLGLTKPPAQRVYAVNEVSLSIERGEVLGLVGESGCG 65 +L ++SK F+ R+ G K A+ V+AV++V+L+I GEV+GLVGESGCG Sbjct: 8 LLALQDVSKRFAQPLDTAARIANLFG-AKKSAEVVHAVDQVTLTIHAGEVVGLVGESGCG 66 Query: 66 KSTVGRMIAGLLPATSGSLSFEGEDMTKPSL----QTHLNIQMVFQNPYASLNPRQRIDQ 121 KST+GRM GL +SGS ++G ++ S Q L +QM+FQ+PYASLNPR RI Sbjct: 67 KSTLGRMAVGLHTLSSGSRLWKGVNLEVSSAAERRQQQLGMQMIFQDPYASLNPRMRIQD 126 Query: 122 VISEAAVYHGLVERKNASAFVADLLKQVGLDPSYAGRYPHQFSGGQRQRIAIARALALDP 181 VI EA V HG+V + +VA LL+ VGLDP+ A R+PHQFSGGQR RI IARALA+ P Sbjct: 127 VIGEAPVAHGMVPASEQTEYVARLLQTVGLDPALARRFPHQFSGGQRARIGIARALAVKP 186 Query: 182 KFIVCDEAVSALDVSVQAQILNLFMELRETKQLTYLFISHNLAVVEYIADRVAIMYLGRI 241 + +VCDEAV+ALDVS+QAQ+LNLF++LR+ LTYLFISH+L VV +++DRV IMYLGRI Sbjct: 187 ELLVCDEAVAALDVSIQAQVLNLFIKLRDELNLTYLFISHDLGVVRHVSDRVLIMYLGRI 246 Query: 242 VEIADKRSVFARPNHPYTQALMADAPRLDAKVVDHRPIQGELPSPLNPPAGCTFHPRCPR 301 VE + +FARPNHPYT AL+A APRL+ K +D ++GE+PSPL+PP+GC FHPRCP Sbjct: 247 VESSPTAELFARPNHPYTVALLASAPRLEVKKIDFYAVKGEIPSPLHPPSGCHFHPRCPH 306 Query: 302 AMLRCSQERPMLRSIGDGHWSACHLN 327 AM RCS E+P+L+ I H+SACHLN Sbjct: 307 AMPRCSVEQPLLKEIAPAHFSACHLN 332 >gi|134096444|ref|YP_001101519.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 321 Score = 199 bits (506), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 115/285 (40%), Positives = 159/285 (55%), Gaps = 13/285 (4%) Query: 40 VYAVNEVSLSIERGEVLGLVGESGCGKSTVGRMIAGLLPA----TSGSLSFEGEDMTKPS 95 V AV +VS S+ G+++GLVGESG GKS I GL+ A +G + + +D+ S Sbjct: 15 VKAVEDVSFSVAPGQIMGLVGESGSGKSMTAYSIMGLIDAPGKIVAGKILLKDQDLRALS 74 Query: 96 LQTHLNIQ-----MVFQNPYASLNPRQRIDQVISEAAVYHGLVERKNASAFVADLLKQVG 150 + I+ M+FQ+P +LNP RID + EA + H V + A A D L +VG Sbjct: 75 PEAMRRIRGNRIAMIFQDPMMTLNPVLRIDTQMMEAVLAHQDVGKATARAMARDALVRVG 134 Query: 151 L---DPSYAGRYPHQFSGGQRQRIAIARALALDPKFIVCDEAVSALDVSVQAQILNLFME 207 + D YPHQFSGG RQR+AIA AL P I+CDE +ALDV++Q QIL + Sbjct: 135 IASPDERLLA-YPHQFSGGMRQRVAIAIALLNKPDLIICDEPTTALDVTIQGQILYEMQK 193 Query: 208 LRETKQLTYLFISHNLAVVEYIADRVAIMYLGRIVEIADKRSVFARPNHPYTQALMADAP 267 L ++I+H+L+V+ +AD V +MY G+IVE + V +P HPYT L+A +P Sbjct: 194 LCRESGTALIWITHDLSVIAGLADAVCVMYAGKIVESGSVQEVLEQPQHPYTHGLIASSP 253 Query: 268 RLDAKVVDHRPIQGELPSPLNPPAGCTFHPRCPRAMLRCSQERPM 312 + + R I G PS LN P+GC F RC RA C P+ Sbjct: 254 SRNLPGLPLRQIPGMTPSLLNLPSGCAFRTRCERATAVCENTPPL 298 >gi|134095501|ref|YP_001100576.1| oligopeptide ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 534 Score = 175 bits (444), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 106/235 (45%), Positives = 152/235 (64%), Gaps = 18/235 (7%) Query: 42 AVNEVSLSIERGEVLGLVGESGCGKSTVGRMIAGLLPA-TSGSLSFEGE-------DMTK 93 AV++VS+ + GE LG+VGESG GK+T+G + L A SG+++F+G+ D + Sbjct: 290 AVDDVSVQVRPGETLGIVGESGSGKTTLGLALLRLSSARVSGTIAFDGKPLNAMQSDALR 349 Query: 94 PSLQTHLNIQMVFQNPYASLNPRQRIDQVISEAAVYH----GLVERKNASAFVADLLKQV 149 P +Q+VFQ+P+ASL+PR+ I+Q++ E H G + A VAD L +V Sbjct: 350 P---LRARMQIVFQDPFASLSPRRTIEQIVGEGLALHQPQLGAAGIRKA---VADALLEV 403 Query: 150 GLDPSYAGRYPHQFSGGQRQRIAIARALALDPKFIVCDEAVSALDVSVQAQILNLFMELR 209 GL P RYPH+FSGGQRQRIAIAR L L P ++ DE S+LDVSVQ Q+L L +EL+ Sbjct: 404 GLPPDIMARYPHEFSGGQRQRIAIARVLVLKPDLVLLDEPTSSLDVSVQQQVLQLLLELQ 463 Query: 210 ETKQLTYLFISHNLAVVEYIADRVAIMYLGRIVEIADKRSVFARPNHPYTQALMA 264 + +L Y+FISH+LAV+ +A RV +M G++VE ++V ++P YTQ L+A Sbjct: 464 KKYELAYIFISHDLAVIRAMAHRVMVMKDGKVVESGMTQAVLSQPTEAYTQRLLA 518 Score = 158 bits (399), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 93/235 (39%), Positives = 134/235 (57%), Gaps = 9/235 (3%) Query: 43 VNEVSLSIERGEVLGLVGESGCGKSTVGRMIAGLL--PATSGSLSFEGEDMTKPSLQTH- 99 VN+VS SI GE LVGESG GK+ I L A +G + FEG+D+ + S Sbjct: 19 VNDVSFSIAAGEKFALVGESGSGKTVTALSILRLNQDAAYAGRILFEGQDILQRSEAAMR 78 Query: 100 ----LNIQMVFQNPYASLNPRQRIDQVISEAAVYHGLVERKNASAFVADLLKQVGL-DPS 154 ++ M+FQ P +LNP I I+E + H + + A+ +LL + G+ +P Sbjct: 79 AVRGKDVAMIFQEPMTALNPLFTIGNQIAEGLMLHEGLSARIAALRAIELLDKTGIPEPQ 138 Query: 155 Y-AGRYPHQFSGGQRQRIAIARALALDPKFIVCDEAVSALDVSVQAQILNLFMELRETKQ 213 A YPHQ SGGQRQR IA ALA PK ++ DE +ALDV++Q QI+ L +L+ + Sbjct: 139 RRALSYPHQLSGGQRQRAMIAMALACKPKLLIADEPTTALDVTIQVQIVELLNQLQREEN 198 Query: 214 LTYLFISHNLAVVEYIADRVAIMYLGRIVEIADKRSVFARPNHPYTQALMADAPR 268 + L I+H+L +V + ADRV +M G +VE+A R +F P YT+ L+A P+ Sbjct: 199 MAVLMITHDLNLVRHFADRVGVMEKGCLVEVAATRELFTAPRETYTRKLLASQPQ 253 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 121 bits (303), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 76/247 (30%), Positives = 127/247 (51%), Gaps = 37/247 (14%) Query: 43 VNEVSLSIERGEVLGLVGESGCGKSTVGRMIAGLLPATSGSLSFEGEDMTKPSLQTHLNI 102 V+ +SLSIE GE L+G SGCGK+T+ RMIAG +G + +G D+T + + + Sbjct: 19 VDNISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLDGVDLTGVPPEQRV-V 77 Query: 103 QMVFQN----PYASL------------NPRQRIDQVISEAAVYHGLVERKNASAFVADLL 146 + VFQN P+ ++ P+ I Q + EA L Sbjct: 78 RTVFQNYALFPHMTVAGNIAFPLEMANTPKSEIKQKVDEA-------------------L 118 Query: 147 KQVGLDPSYAGRYPHQFSGGQRQRIAIARALALDPKFIVCDEAVSALDVSVQAQILNLFM 206 + V L +A RYPH+ SGGQRQR++IARAL PK ++ DE +SALD ++ Q+ + Sbjct: 119 EDVRL-TGFAARYPHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELI 177 Query: 207 ELRETKQLTYLFISHNLAVVEYIADRVAIMYLGRIVEIADKRSVFARPNHPYTQALMADA 266 L++ +T+++++H+ A ++ R+A+M G I ++ + +++ P + + Sbjct: 178 NLQKEVGITFVYVTHDQAEALALSHRIAVMNKGNIEQLDEPTRIYSYPRSRFVADFIGTC 237 Query: 267 PRLDAKV 273 D V Sbjct: 238 NLFDGTV 244 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 119 bits (299), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 76/235 (32%), Positives = 123/235 (52%), Gaps = 7/235 (2%) Query: 42 AVNEVSLSIERGEVLGLVGESGCGKSTVGRMIAGLLPATSGSLSFEGEDMTKPSLQTHLN 101 A+N+VSL GE+ L+G SGCGK+T+ R+IAGL G + +GED + ++ Sbjct: 17 ALNDVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGEDASARHVRER-Q 75 Query: 102 IQMVFQNPYASLNPRQRIDQVISEAAVYHGLVERKNASAF---VADLLKQVGLDPSYAGR 158 + VFQ + +L + + I+ R + S V LL+ V LD A R Sbjct: 76 VGFVFQ--HYALFKHMTVFENIAFGLRVRPAATRPSESVIKEKVTKLLELVQLD-WLADR 132 Query: 159 YPHQFSGGQRQRIAIARALALDPKFIVCDEAVSALDVSVQAQILNLFMELRETKQLTYLF 218 YP Q SGGQRQRIA+ARALA++P+ ++ DE ALD V+ ++ L + +T +F Sbjct: 133 YPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTSIF 192 Query: 219 ISHNLAVVEYIADRVAIMYLGRIVEIADKRSVFARPNHPYTQALMADAPRLDAKV 273 ++H+ +AD++ +M G + +I + V+ P P+ + + +V Sbjct: 193 VTHDQEEALEVADQIVLMNKGHVEQIGAPKDVYNNPASPFVYGFLGNVNLFRGRV 247 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 551,605 Number of extensions: 20851 Number of successful extensions: 186 Number of sequences better than 1.0e-08: 42 Number of HSP's gapped: 149 Number of HSP's successfully gapped: 44 Length of query: 329 Length of database: 1,000,347 Length adjustment: 82 Effective length of query: 247 Effective length of database: 730,157 Effective search space: 180348779 Effective search space used: 180348779 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)