BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2414.p
         (696 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094536|ref|YP_001099611.1| export protein for flagellar bi...   290   2e-79

>gi|134094536|ref|YP_001099611.1| export protein for flagellar
           biosynthesis [Herminiimonas arsenicoxydans]
          Length = 665

 Score =  290 bits (741), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 139/318 (43%), Positives = 229/318 (72%), Gaps = 18/318 (5%)

Query: 35  MLVLPMPVWLLDMLIALSLCISGLIVIVAMYMPGPTAFSTFPAVLLLTTLFRLAISVSTT 94
           M++LP+P  +LD+  + ++ +S ++++ A+Y   P  F  FP VLL++T+ RL+++V++T
Sbjct: 1   MMILPLPAIVLDIFFSFNIALSIIVLLTALYTVKPLDFMVFPTVLLVSTMLRLSLNVAST 60

Query: 95  RLILLEGD-----AGHIVETFGNFVVGGNLVVGLVIFLILTVVQFIVITKGSERVSEVSA 149
           R++L EG      AG ++E FG+F++GGN  VGLV+F+ILT++ F V+TKG+ R++EV A
Sbjct: 61  RVVLTEGHNGPDAAGKVIEAFGHFLIGGNYTVGLVVFIILTIINFTVVTKGAGRIAEVGA 120

Query: 150 RFSLDAMPGKQMSIDSDLRAGILTAEEAKEKRAKLGQESQLHGAMDGAMKFVKGDAIAGI 209
           RF+LDAMPGKQM+ID+DL AG++  ++A+ +R ++ QE++ +GAMDGA K+V+GDAIAGI
Sbjct: 121 RFALDAMPGKQMAIDADLNAGLIGEQDARLRRTQVAQEAEFYGAMDGASKYVRGDAIAGI 180

Query: 210 CIVAINLIGGISIGIIQRNLDAAESMRVYSILSIGDALIAQIPALLISLGAGVITTRVSK 269
            +  IN++GG+ +G++Q ++  + ++  Y++L+IGD L+AQIP+L+IS  AG++ +RV+ 
Sbjct: 181 IVTVINVVGGLIVGMVQHDMAFSAALENYTLLAIGDGLVAQIPSLIISTAAGIVVSRVAS 240

Query: 270 DEEPGQSTNIGRDLVGELFAEPRALLTAAAIMLLFAAIPGMPSMVFIILALGLFVAGMVG 329
           ++      +IG  LVG+LFA+P+ L   AAI+     IPGMP M F      LF+AG++ 
Sbjct: 241 EQ------DIGGQLVGQLFAKPQVLYITAAIVGGMGLIPGMPHMSF------LFLAGVLA 288

Query: 330 VLKPLVDAQSKLEAEEIE 347
               L+ +Q  L+A ++E
Sbjct: 289 GAAYLI-SQRALKAPQVE 305


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.139    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,151,129
Number of extensions: 45206
Number of successful extensions: 167
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 165
Number of HSP's successfully gapped: 1
Length of query: 696
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 608
Effective length of database: 710,387
Effective search space: 431915296
Effective search space used: 431915296
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 132 (55.5 bits)