BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2406.p
         (219 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095087|ref|YP_001100162.1| flagellar biosynthesis protein ...   127   4e-31

>gi|134095087|ref|YP_001100162.1| flagellar biosynthesis protein
           FliP [Herminiimonas arsenicoxydans]
          Length = 252

 Score =  127 bits (319), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 73/197 (37%), Positives = 121/197 (61%), Gaps = 8/197 (4%)

Query: 22  PLLVVTTTSFLKISLVLLVLRNAIGVQQVPPTLAIYGISLALSVFIMAPTVQEIGVHALQ 81
           P +++  TSF +I +VL +LR A+G Q  PP   I G+SL L++F+M+P + +I V A Q
Sbjct: 63  PAVLLMMTSFTRIIIVLSLLRQALGTQSSPPNQVIIGLSLFLTLFVMSPVLDKIYVDAYQ 122

Query: 82  MDSSQVSSRTTPLLVKAQESFEPLRKFMMKVSRPEQRELFLASARKLWPKDVAKEARPSD 141
                 S+    +     ++  PL+ FM+K +R     L++  ++   P+    E  P  
Sbjct: 123 ----PFSANKIQMGEALDKAVAPLKTFMIKQTRESDLALYVKMSKG--PELQGPEDIPLR 176

Query: 142 ALVLIPAFVVSELQAGYEIGFLIYIPFVIIDLLISNLLMALGMQQVSPQTITIPLKLLLF 201
             +L+PAF+ SEL+  ++I F I+IPF+IID++++++LM++GM  VSP  + +P KL+LF
Sbjct: 177 --ILVPAFITSELKTAFQISFAIFIPFLIIDMVVASVLMSMGMMMVSPAIVALPFKLMLF 234

Query: 202 TLVAGWGKLLNALALSY 218
            LV GW  L+ +LA S+
Sbjct: 235 VLVDGWQLLIGSLAQSF 251


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.326    0.139    0.386 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 323,819
Number of extensions: 10977
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 219
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 141
Effective length of database: 743,337
Effective search space: 104810517
Effective search space used: 104810517
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 127 (53.5 bits)