BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2403.p
         (366 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094535|ref|YP_001099610.1| part of export apparatus for fl...   151   5e-38

>gi|134094535|ref|YP_001099610.1| part of export apparatus for
           flagellar proteins [Herminiimonas arsenicoxydans]
          Length = 390

 Score =  151 bits (382), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 180/345 (52%), Gaps = 2/345 (0%)

Query: 4   EKNEEPTHKKIEDARKKGQIAVSRDLARLAMLVVVAELAMATESLWRGAISNLMEAGIHG 63
           EK E  + +K+E AR++G +  SR+LA   +L+  +     T       +++++ +G+  
Sbjct: 8   EKTEPASPRKLEQAREQGDVPRSRELATCTLLLGASAAFWFTGGNMIAELNSMLASGLSF 67

Query: 64  VGQDFIPVAMTILSSAGIFVAIVIAIC--FVVCIVIGVAAHWGQFGMLVATEALTPKFDK 121
             +    + + +  +A   + ++IA     ++ IV+ +A+     G L + +AL P F +
Sbjct: 68  DREMAFDMELLLAHAAASIIKLLIAFAPAALILIVVALASPMLIGGWLFSAQALQPNFGR 127

Query: 122 LNPVNGLKQIISKKKLVELMTTVGKALLIGWIVYVLVRGNLANIVSLSSGDPKDSYYGFL 181
           +NP+ GL  ++S +  VEL   + K +LIG I + +++  +  +++LS    +       
Sbjct: 128 MNPIKGLGNMVSTRSAVELGKAIAKTILIGCIAWTVMKYEIDGVLALSVTPLQSGIEQVG 187

Query: 182 TILRAIFHVIIVVCLCIGLVDFAIQKYFHKKELMMDKEEVKREHKESEGDPLIKGQRKRL 241
            IL   F  I+   + I  +D   Q + H K+LMM +++V++E KES+G+P IK + ++ 
Sbjct: 188 HILLISFTFIVSGLIIIAGIDAPYQMWQHAKKLMMSRQDVRQESKESDGNPEIKAKIRQQ 247

Query: 242 ARQWANEAPVAKTANANAVVVNPTHFAVALYYDATQEMVPQLLAKGKNETARAMIRRARE 301
            R+ A    + +   A+ VV NPTH+AVAL Y       P ++AKG +E A  +   A E
Sbjct: 248 QREMARRRMMTEVPTADVVVTNPTHYAVALKYSENGMRAPTVVAKGADEVAAKIREIALE 307

Query: 302 CGIPVIRHVWLARHLYANCDEDALIPRESYEAVAHVYAVVHELVA 346
             + ++    LAR L+ + +    IP   Y AVA V A V +L A
Sbjct: 308 NNVVMLEAPPLARALFRHAELGDEIPEALYIAVAEVLAYVFQLRA 352


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.135    0.395 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 520,719
Number of extensions: 15417
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 51
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 283
Effective length of database: 726,862
Effective search space: 205701946
Effective search space used: 205701946
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)