BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2396.p
         (701 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096276|ref|YP_001101351.1| fimbrial assembly protein PilQ ...    93   4e-20
gi|134095138|ref|YP_001100213.1| mannose-sensitive hemagglutinin...    63   5e-11

>gi|134096276|ref|YP_001101351.1| fimbrial assembly protein PilQ
           [Herminiimonas arsenicoxydans]
          Length = 697

 Score = 93.2 bits (230), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 148/323 (45%), Gaps = 52/323 (16%)

Query: 280 GMDGGRGGGSFTADSGRGNEEEGRPRIEADPSLNAIMIYDNINKRDMYASLIAELDVQPQ 339
           G+D   GGGS +  S RG+          DP  N + I D  +K +   +L+ + DV  +
Sbjct: 388 GIDNS-GGGSRSILSKRGSAV-------VDPRTNQLFITDIPSKLEEIRALVLKTDVASR 439

Query: 340 QIEIEALIVDIDRSKLSDMGVE--WGVRAGAVN-----------------STINATTAAS 380
           Q+ IEA IV+ D    S +GV+  +G++ G  N                 +  N  T   
Sbjct: 440 QVMIEARIVEADDKFSSSLGVKLGFGLQRGRNNILEVGGQQNADASAPGLNLTNLQTVNG 499

Query: 381 QGLNLP-------LPGA---TLLISNAARFYA-RLKAMESNGDAHVLATPTVLTLDNVAA 429
             +NLP        PG+   TL  + A RF    L A+E++G   ++++P V+T D + A
Sbjct: 500 NAVNLPASPLNGNTPGSVALTLFNAAATRFIGLELSALEADGKGKIISSPRVITADQLKA 559

Query: 430 VLDL-SRSAYVSLVGERVADLADITAGTKLRVIPRIIHDGGQTRVRLEVDIEDGSLDSND 488
           +++  +   Y          ++   A  +L V P+I  DG    V L+VD+   S+    
Sbjct: 560 LIEQGTELPYQQATSSGATSVSFRKANLRLEVTPQITPDGN---VILDVDVNKDSVGVET 616

Query: 489 NGNSGNSNNNTVSTSVTRSTISTQAIIDSQQTLMIGGYRAEALSKNKQKVPVLGDLPVLG 548
              SG         ++    + TQ +ID+  T++IGG   +    +  KVP  GD+PVLG
Sbjct: 617 R--SG--------FAIDTKHVKTQVLIDNGGTVVIGGIFQQTERDSVSKVPFFGDIPVLG 666

Query: 549 GLFRSESQSTSTKERLFLITPRI 571
            LF++  ++    E L  +TP+I
Sbjct: 667 NLFKTTGRTNDKTELLIFLTPKI 689


>gi|134095138|ref|YP_001100213.1| mannose-sensitive hemagglutinin L
           [Herminiimonas arsenicoxydans]
          Length = 581

 Score = 62.8 bits (151), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 61/231 (26%), Positives = 108/231 (46%), Gaps = 33/231 (14%)

Query: 371 STINATTAASQGLNL-PLPGATLL--ISN----------AARFYARLKAMESNGDAHVLA 417
           S+I+AT     G  L  LPG  LL  +SN             F A +  +E+ G+ HVL+
Sbjct: 325 SSIDATARTFSGGQLTALPGQDLLSGVSNLGSMFGLALQTKNFAALISFLETQGNVHVLS 384

Query: 418 TPTVLTLDNVAAVLDL-SRSAYVSLVGERVAD-------------LADITAGTKLRVIPR 463
           +P + TL+N  AVL + +   +V+ V   +               L    +G  L V P+
Sbjct: 385 SPRIATLNNQKAVLKVGTDEFFVTNVSSNITSSGTGGNTVTPNVTLQPFFSGVVLDVTPQ 444

Query: 464 IIHDGGQTRVRLEVDIEDGSLDSNDNGNSGNSNNNTVSTSVTRSTIS-TQAIIDSQ--QT 520
           I   G    + L +      + +++   +  +    ++  + +S  S T +++ +Q    
Sbjct: 445 IDEQG---NIILHIHPSVSDVQTSEKVINLGTGGGVLTLPLAKSNTSETDSVVRAQDGNI 501

Query: 521 LMIGGYRAEALSKNKQKVPVLGDLPVLGGLFRSESQSTSTKERLFLITPRI 571
           + +GG   +  S ++ ++P  GD+PVLG LFR+ +QST  +E + L+ P I
Sbjct: 502 IALGGLMRQGTSSDRSQLPGAGDVPVLGNLFRNTNQSTQKRELVILLKPTI 552


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.314    0.132    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,041,160
Number of extensions: 39023
Number of successful extensions: 100
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 98
Number of HSP's successfully gapped: 2
Length of query: 701
Length of database: 1,000,347
Length adjustment: 88
Effective length of query: 613
Effective length of database: 710,387
Effective search space: 435467231
Effective search space used: 435467231
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 132 (55.5 bits)