BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2385.p (245 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093477|ref|YP_001098552.1| two-component system response r... 119 1e-28 gi|134095857|ref|YP_001100932.1| two-component regulatory system... 97 6e-22 gi|134095798|ref|YP_001100873.1| OmpR family response regulator ... 86 2e-18 gi|134094343|ref|YP_001099418.1| response regulator [Herminiimon... 82 2e-17 gi|134096087|ref|YP_001101162.1| two-component system regulatory... 78 4e-16 >gi|134093477|ref|YP_001098552.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 119 bits (299), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/226 (32%), Positives = 115/226 (50%), Gaps = 2/226 (0%) Query: 1 MKIACYLRNPAVYTQVKEALMRAGLEPVHFTTETDLLRALRRRGFSLIIIDITVAPGSDD 60 M+IA + + V + L AG F + +LL LRR F ++IID V S Sbjct: 1 MRIAVLDDDRSQTDLVCQVLSAAGHFCHPFQSGKELLNQLRRESFDMLIIDWQVPDLSGA 60 Query: 61 NIFSWLNYRSGDRTPTLVLSPTRSAELAALTLDSGADDFLVRPFEVIEFTARVNALIRRS 120 ++ W + P L ++ + L +GADD++++P E ARV AL+RR+ Sbjct: 61 DVLLWAREKLSPNLPVLFMTSRSGEDDIVAGLAAGADDYMIKPIRRGELLARVQALLRRA 120 Query: 121 APTASR-RTIEYAGFSLNRESTRFSYQGTPINLTPREFSMAWLFFSSPGVYISRDTIGAV 179 P+ + I++ F + R + GTPI +T +EF +A LFF + G +SR I Sbjct: 121 YPSQNPIEQIQFGNFIFEARTGRLTMSGTPIEVTQKEFDLALLFFRNLGRPLSRAYILEA 180 Query: 180 IWSTDSDIAGRTIEQHVYKLRKKLQIDPNRPVVMIRTAYNQGYRLE 225 +W+ D +I RT++ HV ++R KLQ+ P + Y+ GYRLE Sbjct: 181 VWARDVEIPSRTMDTHVSRVRSKLQLRPEHG-FRLAPVYSYGYRLE 225 >gi|134095857|ref|YP_001100932.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 97.4 bits (241), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 64/229 (27%), Positives = 112/229 (48%), Gaps = 6/229 (2%) Query: 1 MKIACYLRNPAVYTQVKEALMRAGLEPVHFTTETDLLRALRRRGFSLIIIDITVAPGSDD 60 M+I + + + AL +AG + D RAL ++L+++DI + Sbjct: 1 MRILIVEDDAVLAAALTRALTQAGYAVDYADNGEDANRALSNDAYALVLLDIALPKMDGL 60 Query: 61 NIFSWLNYRSGDRTPTLVLSPTRSAELAALTLDSGADDFLVRPFEVIEFTARVNALIRRS 120 + L R R P L+L+ + + LD GADD++ +PF+++EF ARV ALIRR Sbjct: 61 AVLRRLRERKS-RVPVLILTARDTLDDRVAGLDLGADDYMTKPFDLLEFEARVRALIRRG 119 Query: 121 APTASRRTIEYAGFSLNRESTRFSYQGTPINLTPREFSMAWLFFSSPGVYISRDTIGAVI 180 A +++ + G + E+ R + P+ L+ RE ++ + S G ++++ + + Sbjct: 120 QFDAG-KSLTHGGLRFDLEAHRLFHNDVPVELSVRELAVFEVLLSRQGQVVTKEQMVDRL 178 Query: 181 WSTDSDIAGRTIEQHVYKLRKKLQIDPNRPVVMIRTAYNQGYRLELCKE 229 + D IE +V+++RKKL+ P + IRT GY LE E Sbjct: 179 FGWGDDGGSNAIEVYVHRMRKKLE--PYN--ITIRTVRGMGYLLEKSGE 223 >gi|134095798|ref|YP_001100873.1| OmpR family response regulator [Herminiimonas arsenicoxydans] Length = 233 Score = 85.9 bits (211), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 64/202 (31%), Positives = 100/202 (49%), Gaps = 14/202 (6%) Query: 39 ALRRRGFSLIIIDITVAPGSDDNIFSWLNYRSGDRTPTLVLSPTRSAELAALTLDSGADD 98 AL + F L+I+D+ + S + L R+ R P L+L+ S E LD GADD Sbjct: 39 ALSTQDFDLLILDLGLPKMSGLEVLQRLRARN-SRLPVLILTAGDSIEQRVKGLDLGADD 97 Query: 99 FLVRPFEVIEFTARVNALIRRSA---PTASRRTIEYAGFSLNRESTRFSY-QGTPINLTP 154 F+ +PF + E ARV AL RR A PT I++ S + + R +Y + L+ Sbjct: 98 FMAKPFALSELEARVRALTRRGAGGGPT----VIKHGPLSYD-QVGRIAYINDQMLELSA 152 Query: 155 REFSMAWLFFSSPGVYISRDTIGAVIWSTDSDIAGRTIEQHVYKLRKKLQIDPNRPVVMI 214 RE + + G +S++ + + +++ IE +V++LRKK++I R I Sbjct: 153 RELGLLEVLLQRSGRLVSKEQLVDHLCEWSEEVSNNAIEVYVHRLRKKIEIGGLR----I 208 Query: 215 RTAYNQGYRLELCKEASPTSDT 236 T GY LE EA+PT+ T Sbjct: 209 ATVRGLGYCLEKFAEATPTTLT 230 >gi|134094343|ref|YP_001099418.1| response regulator [Herminiimonas arsenicoxydans] Length = 229 Score = 82.0 bits (201), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 60/217 (27%), Positives = 98/217 (45%), Gaps = 5/217 (2%) Query: 9 NPAVYTQVKEALMRAGLEPVHFTTETDLLRALRRRGFSLIIIDITVAPGSDDNIFSWLNY 68 P + V L AG T + +++R LI++D + S + S + Sbjct: 14 EPPIIELVTFTLKGAGWNVTAVQTAGEAWDFIQQRLPQLILLDWMLPDQSGLRLLSRIRA 73 Query: 69 -RSGDRTPTLVLSPTRSAELAALTLDSGADDFLVRPFEVIEFTARVNALIRRSAPTASRR 127 R + P ++L+ E LD+GADD++ +PF E TAR+NAL+RR P ++ Sbjct: 74 DRQFNELPIIMLTAKSMEEDKIAGLDNGADDYVTKPFSPRELTARINALLRRKTPEHAQT 133 Query: 128 TIEYAGFSLNRESTRFSYQGTPINLTPREFSMAWLFFSSPGVYISRDTIGAVIWSTDSDI 187 + SL+ S S I++ EF + F + P SR + +W I Sbjct: 134 LMTAGSISLDPISCSVSMNDEKIDIGHAEFKLLKFFLAHPDRVFSRSQLLDKVWGDHVVI 193 Query: 188 AGRTIEQHVYKLRKKLQIDPNRPVVMIRTAYNQGYRL 224 RT++ HV +LRK L+ + +I+T + GY L Sbjct: 194 EERTVDVHVLRLRKALKEAEH----LIKTVRSVGYML 226 >gi|134096087|ref|YP_001101162.1| two-component system regulatory protein [Herminiimonas arsenicoxydans] Length = 229 Score = 77.8 bits (190), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 92/192 (47%), Gaps = 14/192 (7%) Query: 45 FSLIIIDITVAPGSDD-NIFSWLNYRSGDRTPTLVLSPTRSAELAALTLDSGADDFLVRP 103 + +I+DI + PG D + + + TP L+L+ + + DSGADD+LV+P Sbjct: 45 YDAVILDIKL-PGIDGLTLCRKMRDELQNDTPVLMLTARDTLDDKVAGFDSGADDYLVKP 103 Query: 104 FEVIEFTARVNALIRRS-APTASRRTIEYAGFSLNRESTRFSYQGTPINLTPREFS-MAW 161 F ++E R+ ALIRR+ + + + + G PI LT F ++ Sbjct: 104 FSLLEVEVRLKALIRRARGKNQGTNFLSVGDLIFDTSTYQVKRDGVPIALTKTGFKILSC 163 Query: 162 LFFSSPGVYISRDTIGAVIWST---DSDIAGRTIEQHVYKLRKKLQIDPNRPVVMIRTAY 218 L +P V +SR+T+ +W DSD + H++ LR+ L D + P M+RT Sbjct: 164 LMKEAPKV-VSRETLELEVWGDHPPDSD----ALRTHIHALRQAL--DKSHPFAMLRTVQ 216 Query: 219 NQGYRLELCKEA 230 GYRL EA Sbjct: 217 GIGYRLVGSDEA 228 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 466,577 Number of extensions: 17960 Number of successful extensions: 79 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 68 Number of HSP's successfully gapped: 14 Length of query: 245 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 166 Effective length of database: 740,042 Effective search space: 122846972 Effective search space used: 122846972 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)