BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2380.p (536 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis pro... 400 e-113 gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis pro... 379 e-106 gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis pro... 355 2e-99 gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis pro... 316 2e-87 gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis pro... 300 1e-82 >gi|134096243|ref|YP_001101318.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 561 Score = 400 bits (1028), Expect = e-113, Method: Compositional matrix adjust. Identities = 248/539 (46%), Positives = 352/539 (65%), Gaps = 12/539 (2%) Query: 2 FTHLKIAKRLGLGLGLVLVLSCMTTGVALWNLQTLSDASSAMMKKPLMKERLSSDWYRAI 61 F +LKI RLG+ GL+LVL T + + LQ ++ A+ +M++ +KERL+ W + I Sbjct: 3 FKNLKIGVRLGMAFGLLLVLMAFMTVMGVLRLQDVAKAT-VLMEEATIKERLAQQWIKGI 61 Query: 62 DSGIMRTTAIAKSSDPSLTAFLATEGPKKSGDL---QEHIGSLLDSDEERALFDKIGVQR 118 ++ +RT A ++SDP L E S + Q+ + +L+ S E + L + +R Sbjct: 62 ETNTVRTFARVRTSDPEQDKILQQEMSAISAAVSKQQDELETLVVSAEGKKLLATVAEKR 121 Query: 119 KRYLAARDQVNQLKAAGETAQALKLLEEQYVPVAKGFQQLMQEFLNVQRHQIDSINLQIE 178 Y A RD V L+ A A+ + + P A + Q ++ +N Q + + +++ Sbjct: 122 ATYTAIRDDVMNLREA-RGAELQNAIANKMKPAADAYIQSVEAVVNAQINNFEDAKGRVD 180 Query: 179 RTAGQSRRLLLILEGLSVLLAAIVV-HLLARSIIRPLTEAVSVAQRVARGDLTAELQVGA 237 T QS R+LLI+ GL L IV+ +L RSI +PL AVSVA+ VA GDLT + V + Sbjct: 181 -TIYQSARMLLIVLGLVALTLGIVLAWMLTRSITKPLDYAVSVARLVASGDLTGRITVDS 239 Query: 238 RDEVGQLMQSLRSMTLNLRELIGKLRRSIHGIAIASAEIATGNQDLSVRTEQQASSVEET 297 +DE GQL+Q+L+ M +L I ++R + IA AS +IA+GN DLS RTE+QASS+EET Sbjct: 240 KDETGQLLQALKDMNDSLTASITQVRSGVDTIATASNQIASGNLDLSSRTEEQASSLEET 299 Query: 298 AAAMEQIATTVKRNAEHARRADETTAVASSAASAGGDAVARMIQTMETINRSSQKISSII 357 A++ME++ +TVK+NA++AR+A++ AS A GG V++++ TM+ IN S++KI II Sbjct: 300 ASSMEELTSTVKQNADNARQANQLAVTASGVAEKGGTVVSKVVDTMDGINTSARKIVDII 359 Query: 358 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELITDSV 417 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIK LI DSV Sbjct: 360 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKTLIDDSV 419 Query: 418 DKVNAGTALVQEAGKTIHGIVESVESVAAIIGDISSSGQDQANGISEVSHAINLIDDVTQ 477 DKV+ G+ LV EAG T+ +V+SV+ V I+ +I ++ Q+Q+ GI +V+ AI +D VTQ Sbjct: 420 DKVDTGSKLVAEAGTTMVEVVDSVKRVTDIMAEIMAASQEQSAGIEQVNQAIGQMDQVTQ 479 Query: 478 KNAALVEQAMAAACAMKDEARNLADLISIFKLEGAPETPAL-----TATGSHPTTHALA 531 +NAALVE+A AAA ++ ++A NLA +SIFKL+G + + A + P T A Sbjct: 480 QNAALVEEAAAAAESLNEQAANLAQAVSIFKLDGVANSSRVATRLPVAASNAPATRQFA 538 >gi|134095756|ref|YP_001100831.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 565 Score = 379 bits (972), Expect = e-106, Method: Compositional matrix adjust. Identities = 240/523 (45%), Positives = 346/523 (66%), Gaps = 8/523 (1%) Query: 2 FTHLKIAKRLGLGLGLVLVLSCMTTGVALWNLQTLSDASSAMMKKPLMKERLSSDWYRAI 61 T+LKI RLGL +VL+L + +W LQ ++ A+ M++ +ERLS W+ Sbjct: 3 ITNLKIGVRLGLAFAVVLLLMASMMVIGVWRLQEVAQAT-VRMEEAAEQERLSIQWHAGN 61 Query: 62 DSGIMRTTAIAKSSDPSLTAFLATEGPKKSGD---LQEHIGSLLDSDEERALFDKIGVQR 118 + +RTTA +S++ + E +S + LQ + SL+ S+E + L +G +R Sbjct: 62 SANAIRTTARIRSTNQEVQQQFQNEMTAQSVEITKLQNKLESLIHSEEGKKLMSAVGDKR 121 Query: 119 KRYLAARDQVNQLKAAGETA---QALKLLEEQYVPVAKGFQQLMQEFLNVQRHQIDSINL 175 Y+ R +V +LKA G A +A K++ + P + + + +Q+ ++ Q+ Sbjct: 122 TVYMDIRKEVFKLKADGSPAAEEEAKKIIASKMDPALETYSKTVQDVVDFQQVTFLEAKT 181 Query: 176 QIERTAGQSRRLLLILEGLSVLLAAIVVHLLARSIIRPLTEAVSVAQRVARGDLTAELQV 235 +++ R LL L +++ L+A++ LL+RSI RPL AV VA+ VA GDL ++V Sbjct: 182 EVDNLYASGRMFLLTLGAIALALSALLAWLLSRSITRPLEYAVEVARTVAGGDLRNRIEV 241 Query: 236 GARDEVGQLMQSLRSMTLNLRELIGKLRRSIHGIAIASAEIATGNQDLSVRTEQQASSVE 295 + DE GQL+Q+LR M L + + ++R I IA AS +IA GN DLS RTE+QASS+E Sbjct: 242 NSSDETGQLLQALRDMNDGLVKSVSEVRTGIETIATASNQIAAGNLDLSSRTEEQASSLE 301 Query: 296 ETAAAMEQIATTVKRNAEHARRADETTAVASSAASAGGDAVARMIQTMETINRSSQKISS 355 ETA++ME++ +TVK+NA++AR+A++ AS A GG V++++ TME IN S++KI Sbjct: 302 ETASSMEELTSTVKQNADNARQANQLAVSASGVAEKGGVVVSQVVDTMEDINSSAKKIVD 361 Query: 356 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELITD 415 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVR+LAQRSAAAAKEIK LI D Sbjct: 362 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRNLAQRSAAAAKEIKTLIGD 421 Query: 416 SVDKVNAGTALVQEAGKTIHGIVESVESVAAIIGDISSSGQDQANGISEVSHAINLIDDV 475 SVDKV+ G+ LV EAG T+ +V SV+ V I+ +I ++ Q+Q+ GI +V+ AI +D V Sbjct: 422 SVDKVDIGSKLVAEAGVTMEEVVNSVKRVTDIMSEIMAASQEQSAGIEQVNQAIGQMDQV 481 Query: 476 TQKNAALVEQAMAAACAMKDEARNLADLISIFKLEG-APETPA 517 TQ+NAALVE+A AAA ++ ++A LA+ +S+FKL+G A TPA Sbjct: 482 TQQNAALVEEAAAAAESLNEQAGKLAEAVSVFKLDGVAASTPA 524 >gi|134094299|ref|YP_001099374.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 575 Score = 355 bits (912), Expect = 2e-99, Method: Compositional matrix adjust. Identities = 219/506 (43%), Positives = 330/506 (65%), Gaps = 5/506 (0%) Query: 33 LQTLSDASSAMMKKPLMKERLSSDWYRAIDSGIMRTTAIAKSSDPSLTAFLA---TEGPK 89 L+ ++ AS ++ L ++ + +W RT A+ K+SDP F T K Sbjct: 34 LENINGASRHLVDDSLSMQKSAQNWLLGTSVNASRTLALVKASDPESQEFFQKAITAQSK 93 Query: 90 KSGDLQEHIGSLLDSDEERALFDKIGVQRKRYLAARDQVNQLKAAGETAQALKLLEEQYV 149 + ++Q+ I ++SD+E+ LF ++ +R Y+ R + +KA G A+A ++++ + V Sbjct: 94 QITEIQKSIEDRINSDKEKELFAEVAKKRSAYIDIRKSILGVKAGGNIAEANQMIDTKMV 153 Query: 150 PVAKGFQQLMQEFLNVQRHQIDSINLQIERTAGQSRRLLLILEGLSVLLAAIVVHLLARS 209 P + ++ L +++ + I R L+I +++LL ++ L Sbjct: 154 PALDAYVDSVKNVLGHYENEVKLADESITDDYLSGRMALIIGAVIAILLGTLIAWRLTVG 213 Query: 210 IIRPLTEAVSVAQRVARGDLTAELQVG-ARDEVGQLMQSLRSMTLNLRELIGKLRRSIHG 268 I RPL EA+ VA+ VA GDLTA + +DE G L+ +L M NL + ++R Sbjct: 214 ITRPLHEALKVAESVAEGDLTARSDMAETQDEPGLLLSALGRMQANLVRTVTQIRLGTDT 273 Query: 269 IAIASAEIATGNQDLSVRTEQQASSVEETAAAMEQIATTVKRNAEHARRADETTAVASSA 328 IA AS+EIA+GN DLS RTEQQASS+EETA++ME++ +TVK+NA+++R+A++ AS+ Sbjct: 274 IATASSEIASGNLDLSSRTEQQASSLEETASSMEELTSTVKQNADNSRQANQLAVAASTV 333 Query: 329 ASAGGDAVARMIQTMETINRSSQKISSIIGVIDGIAFQTNILALNAAVEAARAGEQGRGF 388 A GG V++++ TM IN S++KI IIGVIDGIAFQTNILALNAAVEAARAGEQGRGF Sbjct: 334 AVKGGAVVSQVVDTMGAINNSAKKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGF 393 Query: 389 AVVASEVRSLAQRSAAAAKEIKELITDSVDKVNAGTALVQEAGKTIHGIVESVESVAAII 448 AVVA+EVR+LAQRSAAAAKEIK LI DSV+KV+AG+ LV EAG T+ IV+ V+ VA I+ Sbjct: 394 AVVATEVRNLAQRSAAAAKEIKTLIGDSVEKVDAGSKLVAEAGTTMDEIVDGVKRVADIM 453 Query: 449 GDISSSGQDQANGISEVSHAINLIDDVTQKNAALVEQAMAAACAMKDEARNLADLISIFK 508 +I+++ Q+Q++GI +V+ A++ +D VTQ+NAALVE+A AAA +++D+ARNLA+ +S+F+ Sbjct: 454 AEITAASQEQSDGIEQVNQAVSQMDQVTQQNAALVEEAAAAAESLQDQARNLAEAVSVFR 513 Query: 509 LEGAPETPALTATGSHPTTHALALPL 534 + G+ A +A + A+ PL Sbjct: 514 V-GSGYATAQSAAPRTVQSTAMHKPL 538 >gi|134093903|ref|YP_001098978.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 554 Score = 316 bits (809), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 196/427 (45%), Positives = 288/427 (67%), Gaps = 5/427 (1%) Query: 93 DLQEHIGSLLDSDEERALFDKIGVQRKRYLAARDQ--VNQLKAAGETAQALKLLEEQYVP 150 + ++++ +++ EER + D++ +R RYL +Q + L+A G + +L + P Sbjct: 97 EWKKYLSLPIETLEERKVADEVTAKRIRYLKEAEQGLIAALRA-GRNEEVEDILVNKMPP 155 Query: 151 VAKGFQQLMQEFLNVQRHQIDSINLQIERTAGQSRRLLLILEGLSVLLA-AIVVHLLARS 209 + + + E + +Q + Q +T R++ ++ L L+ AI L R+ Sbjct: 156 LFQSLTKSTDELVELQMKSA-ATGYQDSQTLFHYFRIIAVVGVLLGLIGVAIYAFFLIRA 214 Query: 210 IIRPLTEAVSVAQRVARGDLTAELQVGARDEVGQLMQSLRSMTLNLRELIGKLRRSIHGI 269 I PL E + +A GDLT+ ++V +R+E+G LM L+ M L + + ++R I Sbjct: 215 ITGPLKEMLLHFDTIASGDLTSNIEVKSRNEMGTLMLGLQKMQKRLTDTVAQVREGSMAI 274 Query: 270 AIASAEIATGNQDLSVRTEQQASSVEETAAAMEQIATTVKRNAEHARRADETTAVASSAA 329 + A+ EIA GN DLS RTEQQA+S+EETA++ME++ +TVK+N ++AR+A++ AS+ A Sbjct: 275 STATTEIAAGNLDLSSRTEQQAASLEETASSMEELTSTVKQNTDNARQANQLATSASAVA 334 Query: 330 SAGGDAVARMIQTMETINRSSQKISSIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFA 389 GG V+ ++ TM+ IN S++KI IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFA Sbjct: 335 VKGGAVVSDVVNTMDAINTSARKIVDIIGVIDGIAFQTNILALNAAVEAARAGEQGRGFA 394 Query: 390 VVASEVRSLAQRSAAAAKEIKELITDSVDKVNAGTALVQEAGKTIHGIVESVESVAAIIG 449 VVASEVRSLAQRSAAAAKEIK LI DSV+KV+AGT LV EAG T+ +V+SV+ V I+ Sbjct: 395 VVASEVRSLAQRSAAAAKEIKHLIDDSVNKVDAGTRLVAEAGTTMTEVVDSVKRVTDIMS 454 Query: 450 DISSSGQDQANGISEVSHAINLIDDVTQKNAALVEQAMAAACAMKDEARNLADLISIFKL 509 +I ++ Q+Q+ GI +V+ AI +D+VTQ+NAALVEQA AAA +++D+A NL+ ++S+FKL Sbjct: 455 EILAASQEQSAGIEQVNTAIVQMDEVTQQNAALVEQAAAAASSLRDQATNLSTVVSVFKL 514 Query: 510 EGAPETP 516 +G P Sbjct: 515 QGHQSAP 521 >gi|134093365|ref|YP_001098440.1| methyl-accepting chemotaxis protein [Herminiimonas arsenicoxydans] Length = 572 Score = 300 bits (768), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 183/348 (52%), Positives = 247/348 (70%), Gaps = 11/348 (3%) Query: 194 LSVLLAAIVVHLLARSIIRPLTEAVSVAQRVARGDLTAELQVGARDEVGQLMQSLRSMTL 253 VLLA + L R I RPL +AV +A+ VA GDLT ++ V + +E GQL+Q+L+ M Sbjct: 197 FGVLLAGFMAFWLIRLIARPLHDAVQIARSVAAGDLTQQIHVNSTNETGQLLQALKDMND 256 Query: 254 NLRELIGKLRRSIHGIAIASAEIATGNQDLSVRTEQQASSVEETAAAMEQIATTVKRNAE 313 +L + + +RR I +AS EIA+GN DLS RTE QA S+EETA++ME++ +TV++NA+ Sbjct: 257 SLSKTVSAVRRGTETITVASGEIASGNADLSSRTEAQAGSLEETASSMEELTSTVRQNAD 316 Query: 314 HARRADETTAVASSAASAGGDAVARMIQTMETINRSSQKISSIIGVIDGIAFQTNILALN 373 +AR+A++ A+ A GG V+ ++ TM +I SS+KI IIGVID IAFQTNILALN Sbjct: 317 NARQANQLVVSATEVAVKGGSVVSEVVITMGSIKDSSRKIVDIIGVIDSIAFQTNILALN 376 Query: 374 AAVEAARAGEQGRGFAVVASEVRSLAQRSAAAAKEIKELITDSVDKVNAGTALVQEAGKT 433 AAVEAARAGEQGRGFAVVASEVR+LAQRSA AAKEIK LI DSV KV+AG+ LV +AG T Sbjct: 377 AAVEAARAGEQGRGFAVVASEVRNLAQRSAGAAKEIKALIDDSVHKVDAGSKLVDQAGST 436 Query: 434 IHGIVESVESVAAIIGDISSSGQDQANGISEVSHAINLIDDVTQKNAALVEQAMAAACAM 493 + IV SV+ VA I+ +I+S+ Q+Q++GI +V+ AI+ +D++TQ+NAALVEQA AAA +M Sbjct: 437 MQEIVTSVKHVADIMSEITSASQEQSDGIEQVNQAISQMDEMTQQNAALVEQAAAAAQSM 496 Query: 494 KDEARNLADLISIFKLEGAPE-----------TPALTATGSHPTTHAL 530 +D+A L+ ++IFKL+ PAL A T+ AL Sbjct: 497 QDQAVELSGAVAIFKLDAGGSAMSTSASTRRAAPALQAANPATTSRAL 544 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.127 0.333 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 700,916 Number of extensions: 21981 Number of successful extensions: 201 Number of sequences better than 1.0e-08: 14 Number of HSP's gapped: 144 Number of HSP's successfully gapped: 14 Length of query: 536 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 450 Effective length of database: 716,977 Effective search space: 322639650 Effective search space used: 322639650 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 131 (55.1 bits)