BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2377.p
         (823 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093348|ref|YP_001098423.1| putative TonB-dependent recepto...    58   2e-09

>gi|134093348|ref|YP_001098423.1| putative TonB-dependent receptor
           protein [Herminiimonas arsenicoxydans]
          Length = 763

 Score = 58.2 bits (139), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 67/216 (31%), Positives = 95/216 (43%), Gaps = 35/216 (16%)

Query: 575 QGNIVP----LRIGSPKVNPEKSNDVDL-GYRYAGNRLTLSGSVFYIDFKDRIASQYDPV 629
           QG++ P    L    P + PEKS   +L   R  GN L L  ++F+ D KD + SQ +  
Sbjct: 546 QGSLDPTTNILSKNDPNLKPEKSWTSELTAERDLGNGL-LRATIFHEDTKDALYSQLNVA 604

Query: 630 SALSTQFNVGASRTYGLELEAGYKLND----NWNMYGSLTHADSSMLDDKVAVRAANGTA 685
           + ++   NV   RT GLE+   Y+ ND      ++ GS+T ADS        VR  N  A
Sbjct: 605 TNVTNIQNVDHMRTTGLEV--AYQANDIAIRGLDLSGSVTFADSK------TVRNDNNPA 656

Query: 686 TTLQTTGKQMPDTPEWLASLSLQYSSGPFYASAQG-RYVGQRYTTLVNDDK-------IG 737
               + GK  P  P+W AS    Y     +    G RY G++Y  L N D        + 
Sbjct: 657 ----SVGKWQPRVPKWRASALASYRPDDRWTYTFGARYSGRQYGQLDNSDVNGFAYTGVS 712

Query: 738 GYTLFDLGAGYRFDKTLFLQTPTIRFQLLNLFDKKY 773
            + + D+   YR  K       T    + NL +KKY
Sbjct: 713 SFFVTDVRVRYRIAKQW-----TASLGIDNLNNKKY 743


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.315    0.132    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,585,727
Number of extensions: 68243
Number of successful extensions: 144
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 144
Number of HSP's successfully gapped: 2
Length of query: 823
Length of database: 1,000,347
Length adjustment: 90
Effective length of query: 733
Effective length of database: 703,797
Effective search space: 515883201
Effective search space used: 515883201
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 133 (55.8 bits)