BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2376.p
         (226 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095666|ref|YP_001100741.1| putative biopolymer transport e...    65   4e-12

>gi|134095666|ref|YP_001100741.1| putative biopolymer transport
           exbB-like protein [Herminiimonas arsenicoxydans]
          Length = 203

 Score = 64.7 bits (156), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 60/102 (58%), Gaps = 4/102 (3%)

Query: 85  QAQREDLGEAIYIAGK---KRVNARLWVLDTIVTAAPLLGLVGTILGIIDTFAVLASSGI 141
            A R+ + E+I  AG+     +   L  L TI T APL+GL GT++G+I+ F    ++G 
Sbjct: 82  NAPRDVMKESIEEAGRGTAHELERFLTTLGTIATLAPLMGLFGTVVGMIEIFGSQNATGT 141

Query: 142 -SDPSGVSKGIGTALYATALGISIALFGLLFYNYLRECADNL 182
            ++P+ ++ GI  ALY T  G++IA+  L+FY + R   D+ 
Sbjct: 142 GANPTQLAHGISIALYNTGFGLAIAMPSLVFYRHFRALVDSF 183


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.323    0.138    0.391 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 338,763
Number of extensions: 10558
Number of successful extensions: 53
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 53
Number of HSP's successfully gapped: 2
Length of query: 226
Length of database: 1,000,347
Length adjustment: 78
Effective length of query: 148
Effective length of database: 743,337
Effective search space: 110013876
Effective search space used: 110013876
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 127 (53.5 bits)