BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2375.p (251 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094985|ref|YP_001100060.1| GntR family transcriptional reg... 87 6e-19 gi|134096476|ref|YP_001101551.1| putative regulator protein [Her... 64 8e-12 gi|134096485|ref|YP_001101560.1| putative regulator protein [Her... 61 6e-11 >gi|134094985|ref|YP_001100060.1| GntR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 312 Score = 87.4 bits (215), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 68/238 (28%), Positives = 117/238 (49%), Gaps = 11/238 (4%) Query: 13 PRYRWLADIIRDTIDRGLFTDNQALPPERELAEHYEVSRDTVRKALRYMEERGIIYSDHG 72 P Y+ + +I ++ G + + +P E ELA ++VS+ TVRKA+ + ++ G Sbjct: 80 PLYQQIKALITKSLQSGEWRPGELIPSEIELANRFKVSQGTVRKAIDELSAENLVVRRQG 139 Query: 73 RGTFVSPAI-VRGTTRFIDSFSQDTGNRGGVPGQRIISIENVGASMAIATLLNIESGTPL 131 +GTFV+ R RF+ D G+ P + + A IA L+I++G + Sbjct: 140 KGTFVATHHEARAQFRFL-RLKPDVGD-AQYPENTVTEARRLRAPADIARQLDIKTGDSV 197 Query: 132 VRVRRVRLIDDAPVGVHDAHLVLPRGSRLTRSQIER----SGSLYKLLTAQYGFDPAEAV 187 V+R++ D AP + + L LP GS +ER G +Y LL ++G AV Sbjct: 198 FFVKRIQSFDGAPTILEE--LWLP-GSIFKGLSLERVLQYKGPMYALLETEFGIQMIRAV 254 Query: 188 ENLCAGAADADDAQWLDVPVAAPLLICERITLSDRRQPIEYCLMKYVS-SYRYRTRIA 244 EN+ A AD A+ L +P+ PLL R++ + + +E YV+ ++ Y+ ++ Sbjct: 255 ENIRAVVADQSAAELLMLPLNTPLLSVNRVSFTYGDKAVEVRRSLYVTNNHHYQNELS 312 >gi|134096476|ref|YP_001101551.1| putative regulator protein [Herminiimonas arsenicoxydans] Length = 247 Score = 63.9 bits (154), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 58/202 (28%), Positives = 93/202 (46%), Gaps = 5/202 (2%) Query: 29 GLFTDNQALPPERELAEHYEVSRDTVRKALRYMEERGIIYSDHGRGTFVSPAI-VRGTTR 87 G + +A+P E++L E + VS T+RKA+ + I+ GRGTFVS + R Sbjct: 29 GEWKPGEAIPAEKKLCELFSVSIGTLRKAIDELVAENILIRHQGRGTFVSMHNREQQMFR 88 Query: 88 FIDSFSQDTGNRGGVPGQRIISIENVGASMAIATLLNIESGTPLVRVRRVRLIDDAPVGV 147 F + + D G + + I + ++A+ L + G+ + V + APV V Sbjct: 89 FFNVANHD-GTKSYPHLELIAFAKKKAGTLAVQKLR--QPGSKVYEFTNVLSLQGAPVIV 145 Query: 148 HDAHLVLPRGSRLTRSQI-ERSGSLYKLLTAQYGFDPAEAVENLCAGAADADDAQWLDVP 206 D + LT + + R +LY L ++G E L A +ADA A L + Sbjct: 146 DDITVPDLLFVGLTEAVLRNRPNTLYSLYQVRFGISIIRIEERLRAVSADARYADLLHLA 205 Query: 207 VAAPLLICERITLSDRRQPIEY 228 + APLL R+ S QP+E+ Sbjct: 206 IGAPLLEVRRVAYSYDDQPVEW 227 >gi|134096485|ref|YP_001101560.1| putative regulator protein [Herminiimonas arsenicoxydans] Length = 248 Score = 60.8 bits (146), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 55/227 (24%), Positives = 98/227 (43%), Gaps = 5/227 (2%) Query: 15 YRWLADIIRDTIDRGLFTDNQALPPERELAEHYEVSRDTVRKALRYMEERGIIYSDHGRG 74 Y+ + + + G + +A+P E++L E + VS T+RKA+ + I+ GRG Sbjct: 17 YKEVQKQVLRALAAGEWKPGEAIPAEKKLCERFSVSIGTLRKAIDELVAENILIRHQGRG 76 Query: 75 TFVSPAI-VRGTTRFIDSFSQDTGNRGGVPGQRIISIENVGASMAIATLLNIESGTPLVR 133 T+V+ + RF + + +GN+ P ++ A A L + + + Sbjct: 77 TYVAQHNRAQQMFRFFN-VTDHSGNK-TYPQLSLVEFAKRRADKHAAEKLLLPATGKVFA 134 Query: 134 VRRVRLIDDAPVGVHDAHLVLPRGSRLTRSQI-ERSGSLYKLLTAQYGFDPAEAVENLCA 192 + + + PV V D L P LT +QI R +LY L +G E L A Sbjct: 135 FTNLLYLQEQPVIVDDIVLPEPLFVSLTEAQIRNRPNTLYNLYQIDFGLSVIRTEERLRA 194 Query: 193 GAADADDAQWLDVPVAAPLLICERITLSDRRQPIEYCLMKYVSSYRY 239 A L + + P+L R+ S PIE+ + Y+++ ++ Sbjct: 195 APVGEKHAALLGLKLGTPILEVRRVAFSYNDLPIEWRI-SYINTEKH 240 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 489,512 Number of extensions: 19845 Number of successful extensions: 65 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 62 Number of HSP's successfully gapped: 3 Length of query: 251 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 172 Effective length of database: 740,042 Effective search space: 127287224 Effective search space used: 127287224 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 127 (53.5 bits)