BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2364.p
         (269 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096587|ref|YP_001101662.1| transcriptional repressor for m...   132   2e-32

>gi|134096587|ref|YP_001101662.1| transcriptional repressor for
           molybdate uptake [Herminiimonas arsenicoxydans]
          Length = 300

 Score =  132 bits (331), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 91/258 (35%), Positives = 139/258 (53%), Gaps = 25/258 (9%)

Query: 20  QRLDQRFFALLDAIAQTGSINRAASTAGYSYKGAWMLLESAGNLVNGALIETVTGGKGGG 79
           +R D     LL+ I  +GSI+ AAS  G SYK AW  +E+  NL +  L+    GG  GG
Sbjct: 55  KRWDH--LELLERIDASGSISAAASAMGMSYKAAWQAVEAINNLSHEPLVVRQPGGSTGG 112

Query: 80  GTRLTPAAVELLAVWRELQRRNLEFLHRQETW----------LNQLPALAGLLRRMSMKT 129
           GT LT     L+A +R L+          + W          ++       + RR  M+T
Sbjct: 113 GTCLTDYGRRLVATYRRLE----------QEWASAPVAIGRSMSDFDQYYRMTRRFDMQT 162

Query: 130 SARNQFAGVISAIDTGPVTTQVTVTIAGAQEIVATMTTTAANRLKIKIGGNAIALIKSSA 189
           SARNQF G +SA+  G V  ++ + I   +E+ A +T  +A  L +++G  A AL+K+  
Sbjct: 163 SARNQFLGTVSAVKMGAVNAEIILDIGNGEELAAIITNDSAEHLGLEVGSEAYALVKAQW 222

Query: 190 VVL-VTDFAGFALSARNQFEGTVSRVERGAVSSLVVLTLPGGACMTASLTNDAIDALSLT 248
           ++L V D      SARN+  GTV R + GAV++ VV+ LPGG  + + +TN+++  L L 
Sbjct: 223 IILAVGD--DIKTSARNRLNGTVVRCQEGAVNAEVVIELPGGKTIASIITNESVKILGLK 280

Query: 249 VGQGATAVFKAYAVMVAV 266
            G  A+A+ KA  +++AV
Sbjct: 281 EGVRASALIKASHIILAV 298



 Score = 56.2 bits (134), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 31/68 (45%), Positives = 45/68 (66%)

Query: 202 SARNQFEGTVSRVERGAVSSLVVLTLPGGACMTASLTNDAIDALSLTVGQGATAVFKAYA 261
           SARNQF GTVS V+ GAV++ ++L +  G  + A +TND+ + L L VG  A A+ KA  
Sbjct: 163 SARNQFLGTVSAVKMGAVNAEIILDIGNGEELAAIITNDSAEHLGLEVGSEAYALVKAQW 222

Query: 262 VMVAVQQD 269
           +++AV  D
Sbjct: 223 IILAVGDD 230


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.318    0.129    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 426,704
Number of extensions: 14482
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 68
Number of HSP's successfully gapped: 2
Length of query: 269
Length of database: 1,000,347
Length adjustment: 80
Effective length of query: 189
Effective length of database: 736,747
Effective search space: 139245183
Effective search space used: 139245183
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 128 (53.9 bits)