BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2363.p
         (333 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096601|ref|YP_001101676.1| putative monooxygenase [Hermini...    65   5e-12

>gi|134096601|ref|YP_001101676.1| putative monooxygenase
           [Herminiimonas arsenicoxydans]
          Length = 333

 Score = 65.1 bits (157), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 58/178 (32%), Positives = 81/178 (45%), Gaps = 25/178 (14%)

Query: 19  GNARDALLQTVDHAVVAEALGYHDVWVAEHHYSSFAIGSALMVLLAQIAARTSRIRLGTG 78
           G   DA  +++D A   E  GY+  W+AEHH       +A  V++  +A  TS IR+G+G
Sbjct: 21  GTPADAFHRSLDLAQRVEKRGYNRYWLAEHHSMPGIASAATAVVIGYVAGGTSTIRVGSG 80

Query: 79  ASLLALNDPLRVAEDVATLDLLSNGRMEFGVARGGPFPEQYRHAGLSGADQARARMIEAL 138
             +L  + PL VAE   TL+ L  GR++ G+ R              G+DQA AR +   
Sbjct: 81  GIMLPNHAPLVVAEQFGTLESLYPGRIDLGLGRA------------PGSDQATARALRR- 127

Query: 139 DVIQRAWQGVPFS---TEGRFF-----HYDRVQLQPQPLQCPIPVWLASMSEDSLDLA 188
              + +  G  F     E R F      + RVQ  P      IP+WL   S  S  LA
Sbjct: 128 ---EISDDGSEFPRQLNELRAFLQPADTHARVQAIPGA-GLNIPIWLLGSSSYSAQLA 181


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.135    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 602,522
Number of extensions: 24421
Number of successful extensions: 83
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 83
Number of HSP's successfully gapped: 1
Length of query: 333
Length of database: 1,000,347
Length adjustment: 82
Effective length of query: 251
Effective length of database: 730,157
Effective search space: 183269407
Effective search space used: 183269407
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 129 (54.3 bits)