BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2361.p (542 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094186|ref|YP_001099261.1| two-component system response r... 242 3e-65 gi|134096598|ref|YP_001101673.1| two-component regulatory system... 241 9e-65 gi|134093917|ref|YP_001098992.1| putative sigma-54 dependent tra... 235 4e-63 gi|134096418|ref|YP_001101493.1| propionate catabolism transcrip... 228 7e-61 gi|134093746|ref|YP_001098821.1| AoxR regulatory protein [Hermin... 222 3e-59 >gi|134094186|ref|YP_001099261.1| two-component system response regulator [Herminiimonas arsenicoxydans] Length = 473 Score = 242 bits (618), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 128/264 (48%), Positives = 177/264 (67%), Gaps = 9/264 (3%) Query: 180 RQQLQEEKRQLSRQLQGKYKLDNVIGISKAMQEVFAQVHQSAPSRSTMLLRGESGTGKEV 239 R+ L+E R+ S + Q + ++G + AMQ+VF + + + S T+L+ GESG+GKE+ Sbjct: 77 RRALEESLRETSIE-QVSAETPEILGQAPAMQDVFRAIGRLSQSNVTVLITGESGSGKEL 135 Query: 240 IARAIHYLSPRKDGPFIKVNCAALSETLLESELFGHEKGAFTGAQGERKGRFELAHGGTL 299 +ARA+H SPR PFI +N AA+ + LLESELFGHE+GAFTGAQ R+GRFE A GGTL Sbjct: 136 VARALHKHSPRASQPFIALNTAAIPKDLLESELFGHERGAFTGAQASRRGRFEQADGGTL 195 Query: 300 FLDEIGEISPAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRAD 359 FLDEIG++ Q +LLRVL + F RVGG + +K +VR++ AT+++LE+ V +G FR D Sbjct: 196 FLDEIGDMPFDLQTRLLRVLSDGHFYRVGGHQPLKANVRVIAATHQNLEQRVREGLFRED 255 Query: 360 LYYRINVVSIFIPPLRERREDIPYLVEHFL----EKFRVENQRAMVAMSPQAMKVMINCY 415 LY+R+NV+ + +P LRERREDIP L HFL ++ VE +R MS AM+ + N Sbjct: 256 LYHRLNVIRLRLPSLRERREDIPILTRHFLAQSAKQLGVEVKR----MSDGAMQFLTNLE 311 Query: 416 WPGNVRELENCVERTATMMRGDLI 439 PGNVR+LEN M G + Sbjct: 312 LPGNVRQLENLCNWITVMAPGQTV 335 >gi|134096598|ref|YP_001101673.1| two-component regulatory system response regulator [Herminiimonas arsenicoxydans] Length = 474 Score = 241 bits (614), Expect = 9e-65, Method: Compositional matrix adjust. Identities = 123/258 (47%), Positives = 169/258 (65%), Gaps = 12/258 (4%) Query: 179 ERQQLQEEKRQLSRQLQG--KYKLDNVIGISKAMQEVFAQVHQSAPSRSTMLLRGESGTG 236 +R L+ E L R+L + +D ++G S A+Q V + + A ST+L+ GESGTG Sbjct: 153 DRTHLRRENFILRRELDSHVDFGVDGLVGNSTALQPVRETIKRLATVSSTVLITGESGTG 212 Query: 237 KEVIARAIHYLSPRKDGPFIKVNCAALSETLLESELFGHEKGAFTGAQGERKGRFELAHG 296 KE+ ARA+HYLS R F+ VNC A++ ++ESELFGH KGAF+GA R+G F A G Sbjct: 213 KEIAARAMHYLSSRSGNHFVPVNCGAVAPDIIESELFGHVKGAFSGAASSREGLFFYAQG 272 Query: 297 GTLFLDEIGEISPAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEF 356 GTLFLDE+ E+ A Q KLLRVL+E++ VG R I VDVR++ ATNR++E+AV +G F Sbjct: 273 GTLFLDEVAELPMAMQVKLLRVLEEKKIRPVGAEREIPVDVRVIAATNRNVEEAVQEGRF 332 Query: 357 RADLYYRINVVSIFIPPLRERREDIPYLVEHFLEKFRVENQRAMVAMSPQA-----MKVM 411 R DLYYR+NVV + +PPLRER +DIP L +F+ + + + + PQ + M Sbjct: 333 RQDLYYRLNVVQVHMPPLRERADDIPALAAYFVRQLAPQ-----LGVPPQQPDNALLAAM 387 Query: 412 INCYWPGNVRELENCVER 429 ++ WPGNVREL N +ER Sbjct: 388 VSHAWPGNVRELRNLIER 405 >gi|134093917|ref|YP_001098992.1| putative sigma-54 dependent transcriptional regulator [Herminiimonas arsenicoxydans] Length = 550 Score = 235 bits (600), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 122/264 (46%), Positives = 175/264 (66%), Gaps = 8/264 (3%) Query: 170 VRLYRSVAAERQQLQEEKRQLSRQLQGKYKLDNVIGISKAMQEVFAQVHQSAPSRSTMLL 229 ++L +A +++L + ++S+ G + +I S MQ++ + A +T+L+ Sbjct: 215 IQLQEELARAQEKLHRFEMEVSQLRMGNPAIAGLITRSPIMQQITVLAQKVAKVGATVLI 274 Query: 230 RGESGTGKEVIARAIHYLSPRKDGPFIKVNCAALSETLLESELFGHEKGAFTGAQGERK- 288 GESG GKEV+ R IH S GPF+K+NC A+ LLESELFG+E GAFTGAQ + K Sbjct: 275 TGESGVGKEVLTRLIHKESTHDKGPFVKINCGAIPRDLLESELFGYEGGAFTGAQRQGKV 334 Query: 289 GRFELAHGGTLFLDEIGEISPAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLE 348 G E+A GTLFLDEIGE+ Q KLL+VLQ+R R+G +R I+VDVR+V ATNRDL+ Sbjct: 335 GMIEVADKGTLFLDEIGELPLDLQVKLLQVLQDRTLTRLGSTRPIQVDVRVVAATNRDLQ 394 Query: 349 KAVAKGEFRADLYYRINVVSIFIPPLRERREDIPYLVEHFLEKFRVE---NQRAMVAMSP 405 V +FR+DL+YR+NVV + +PPLRERREDI L++HFL++ + ++R +S Sbjct: 395 AMVDARQFRSDLFYRLNVVPLHVPPLRERREDILPLIQHFLDELNAQYGFDKR----LSE 450 Query: 406 QAMKVMINCYWPGNVRELENCVER 429 Q++ +++ WPGN+REL N VER Sbjct: 451 QSLAALLDYDWPGNIRELRNMVER 474 >gi|134096418|ref|YP_001101493.1| propionate catabolism transcriptional activator [Herminiimonas arsenicoxydans] Length = 550 Score = 228 bits (580), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 120/247 (48%), Positives = 167/247 (67%), Gaps = 11/247 (4%) Query: 194 LQGKYKLDNVIGISKAMQEVFAQVHQSAPSRSTMLLRGESGTGKEVIARAIHYLSPRKDG 253 L+ K+ + +V G S M+ V + A S +T+L++GE+GTGKE++A+AIH P G Sbjct: 215 LRAKHHIKDVRGESAVMESVRQSITLFAKSPATVLIQGETGTGKELVAQAIHRAHPLIQG 274 Query: 254 ------PFIKVNCAALSETLLESELFGHEKGAFTGAQ-GERKGRFELAHGGTLFLDEIGE 306 PF+ VNC AL+E+LLESELFG+E+GAFTG++ G R G FE AH GTLFLDEIGE Sbjct: 275 KTQAGHPFVAVNCGALAESLLESELFGYEEGAFTGSRRGGRAGLFEAAHRGTLFLDEIGE 334 Query: 307 ISPAFQAKLLRVLQEREFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRADLYYRINV 366 + + Q +LLRVL+ERE RVGG+R I V VR+++AT+ DL+ V +G FRADL+YR++V Sbjct: 335 MPLSLQTRLLRVLEEREVVRVGGTRPIPVSVRIISATHCDLDARVREGRFRADLFYRLSV 394 Query: 367 VSIFIPPLRERREDIPYLVEHFLE----KFRVENQRAMVAMSPQAMKVMINCYWPGNVRE 422 + + +PPLR+R ED+P L E +L+ V + A M ++ + WPGNVRE Sbjct: 395 LRLSLPPLRQRPEDVPALTEWYLKSALASLDVRPHANLHAEISTCMPLLASYAWPGNVRE 454 Query: 423 LENCVER 429 L N +ER Sbjct: 455 LRNLMER 461 >gi|134093746|ref|YP_001098821.1| AoxR regulatory protein [Herminiimonas arsenicoxydans] Length = 454 Score = 222 bits (566), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 124/336 (36%), Positives = 188/336 (55%), Gaps = 18/336 (5%) Query: 203 VIGISKAMQEVFAQVHQSAPSRSTMLLRGESGTGKEVIARAIHYLSPRKDGPFIKVNCAA 262 +GIS+ +Q + V + +++L+ GESG+GKE +AR +H + + PFI VNC A Sbjct: 131 TLGISREIQRLEEMVVKMGEQWTSVLVTGESGSGKEELARLLHRSAQAGNNPFIAVNCGA 190 Query: 263 LSETLLESELFGHEKGAFTGAQGERKGRFELAHGGTLFLDEIGEISPAFQAKLLRVLQER 322 L E ++E+ELFG+E+GAFTGA +G FE A+ GT+FLDEIGE++PA Q +LLRVLQE Sbjct: 191 LPEGMMEAELFGYERGAFTGAAKSHRGYFEQANNGTVFLDEIGELAPAAQVRLLRVLQEH 250 Query: 323 EFERVGGSRSIKVDVRLVTATNRDLEKAVAKGEFRADLYYRINVVSIFIPPLRERREDIP 382 R+G + IKV+ RL+ AT+RD+ + V G FR DLYYRIN++ + +PPLRER +D+ Sbjct: 251 TLTRLGSEKPIKVNFRLIAATHRDVREEVKAGRFREDLYYRINIIQLRVPPLRERLDDVA 310 Query: 383 YLVEHFLEKFRVENQRAMVAMSPQAMKVMINCYWPGNVRELENCVERTATMMRGDLITEV 442 +L FLE++ + + +S + + W GN+REL++ +ER + L+ Sbjct: 311 WLARLFLEQWNQAHPTSPRMLSEPTITFLCTLPWRGNIRELKHAIERACLLTAHPLLRPD 370 Query: 443 HFSCQQNKCLTKVLHEPGQQQPVVVVPLERISAHTLPSSPSGMVKDKPLAATPPTSERER 502 F Q ++ H P + P + P H + PLA ER Sbjct: 371 DFEMQISEEKLGTFH-PATEVPAMAQP------HII-----------PLAEFNREQERRY 412 Query: 503 LIWAMEQCGWVQAKAARALNISPRQMGYALQKFNIE 538 L+ + A+ A AL IS + + +K I+ Sbjct: 413 LVQVLAHYSGQMAQTAAALGISRKTLWEKTRKLGIK 448 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.319 0.134 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 868,585 Number of extensions: 31615 Number of successful extensions: 157 Number of sequences better than 1.0e-08: 8 Number of HSP's gapped: 148 Number of HSP's successfully gapped: 8 Length of query: 542 Length of database: 1,000,347 Length adjustment: 86 Effective length of query: 456 Effective length of database: 716,977 Effective search space: 326941512 Effective search space used: 326941512 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)