BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2358.p
         (124 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095418|ref|YP_001100493.1| factor involved in Fe-S cluster...    56   7e-10

>gi|134095418|ref|YP_001100493.1| factor involved in Fe-S cluster
           assembly and activation [Herminiimonas arsenicoxydans]
          Length = 107

 Score = 55.8 bits (133), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 33/103 (32%), Positives = 48/103 (46%), Gaps = 3/103 (2%)

Query: 1   MNITITPAAEKFMRRMVRFNGGSVQSGFRLKVSAGGCSGLSSEFSVQAQPTPGDVSFDCN 60
           M IT+T  A K + R +   G  +  G R  V   GCSGL+ +     +    D  F+ +
Sbjct: 1   MAITLTEKAAKHINRYMERRGKGI--GLRFGVRTTGCSGLAYKLEYVDESASEDSVFESH 58

Query: 61  GLAVFLPAESRLLLEGVTIDFADTLSESGLTFRNPNAPAASCG 103
           G+ VF+  +S   ++G  +DFA      G  F NPN     CG
Sbjct: 59  GVKVFVDPKSLPYIDGTELDFAREGLNEGFKFHNPNVK-DECG 100


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.131    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 230,342
Number of extensions: 8293
Number of successful extensions: 24
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 24
Number of HSP's successfully gapped: 1
Length of query: 124
Length of database: 1,000,347
Length adjustment: 71
Effective length of query: 53
Effective length of database: 766,402
Effective search space: 40619306
Effective search space used: 40619306
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 123 (52.0 bits)