BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2353.p
         (379 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095420|ref|YP_001100495.1| tRNA 4-thiouridine sulfurtransf...   259   1e-70

>gi|134095420|ref|YP_001100495.1| tRNA 4-thiouridine
           sulfurtransferase [Herminiimonas arsenicoxydans]
          Length = 417

 Score =  259 bits (663), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 152/387 (39%), Positives = 230/387 (59%), Gaps = 14/387 (3%)

Query: 1   MDTI------IYLDNNATTRPTPEVLAAMQACQHEAWGNPSSK-HRVGDAARQRMNSARA 53
           +DTI      IY+D +ATT   P V   M     E +GNP+S+ H  G  A + +  AR 
Sbjct: 10  LDTIKAPHFPIYMDYSATTPIDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEDARE 69

Query: 54  EVAALLAASAAELVFTSGATEANHMAILGALALQPQR-RHIVSSLVEHPSTLLLLRHLQA 112
           +VA L+ A   E+++TSGATE N++A+ GA      + +HI++   EH + L  +R L+ 
Sbjct: 70  QVAKLVNADPREIIWTSGATEGNNLALKGAAQFYKTKGKHIITVKTEHKAVLDTVRELER 129

Query: 113 QGVRISWIGVDEHGQLQLDELAAAITSDTALVSLMWANNETGVVFPIVQAAELARQRGVL 172
           QG   +++   ++G + +++LA AI  DT LVS+M  NNE GV+ PI +  EL R +G++
Sbjct: 130 QGFEATYLQPQDNGLITIEQLAEAIRPDTILVSVMLVNNEIGVIQPIDEIGELCRSKGII 189

Query: 173 FHTDAVQAMGRVPCDVAGMGVDLLSLSAHKLHGPKGIGALYVRKG--IKLPPLLF-GHQE 229
           FH DA QA G+V  D+    VDL++ +AHK +GPKGIGALYVR+   I++   +  G  E
Sbjct: 190 FHCDAAQATGKVKIDLEKSKVDLMTFTAHKTYGPKGIGALYVRRKPRIRIEAQMHGGGHE 249

Query: 230 RGRRGGTEDVAGIVGLGVAADQARAAL-PRMLAVSALRQRFERGLACLPQVQINGAGAAR 288
           RG R GT     IVG+G A   AR  +   ++ ++ALR R  +GL  + +V ING    R
Sbjct: 250 RGLRSGTLATHQIVGMGEAFRIAREEMDEEIVRITALRDRLAKGLMDMEEVYINGDMDHR 309

Query: 289 LPNTVSVRFGQVHAERVLDRLDRLGICASSGSACTASGDMPSHVLMAMGMSSEQAAATIR 348
           +P+ ++V F  V  E ++  +  L +  SSGSACT++   PS+VL A+G S E A ++IR
Sbjct: 310 VPHNLNVSFNYVEGESLIMAIKDLAV--SSGSACTSASLEPSYVLRALGRSDELAHSSIR 367

Query: 349 FSLSRDTREDEIDAVLAALSEIVQPLQ 375
           F+  R T E+++D  +  + E V  L+
Sbjct: 368 FTFGRFTTEEDVDFTIKLIKEKVAKLR 394


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.132    0.377 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 651,234
Number of extensions: 25314
Number of successful extensions: 97
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 92
Number of HSP's successfully gapped: 1
Length of query: 379
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 296
Effective length of database: 726,862
Effective search space: 215151152
Effective search space used: 215151152
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)