BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2350.p
         (382 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094352|ref|YP_001099427.1| putative polysaccharide biosynt...   152   4e-38

>gi|134094352|ref|YP_001099427.1| putative polysaccharide
           biosynthesis protein [Herminiimonas arsenicoxydans]
          Length = 412

 Score =  152 bits (383), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 178/374 (47%), Gaps = 20/374 (5%)

Query: 12  DVSTRELEAVTRVLVSSGLSAGPVVESFENEFASYLGRTYGVTAASGTVALMLALRAMGI 71
           D+S  +++AV  VL S  L+ GPVV +FE   A Y G  + +   S T AL +A  A+G+
Sbjct: 30  DISEADIQAVATVLRSDFLTQGPVVPAFEKAVAEYCGARHAIAVNSATSALHIACLALGV 89

Query: 72  RAGDEVIASAYSWHQIVHAITLVGATPVFADIDYWSGNLAPHKVADK------ISQRTRA 125
             GD V  S  ++    +     GA   F DID  + N++   + +K      + +  + 
Sbjct: 90  GPGDCVWTSPITFVASANCARYCGADVDFVDIDPRTYNMSVTHLEEKLLKAEAVGRLPKV 149

Query: 126 IVVGNCNGHPAAWAEFRQLAQAHGLRLIEDSTEAIGSRYQGRVVGN--FGDIAIFDFSQP 183
           ++  +  G P        L+  +G R+IED++ AIG RY+G+ +GN  + DI +F F   
Sbjct: 150 VIPVHLCGQPCEMEAIHALSLKYGFRIIEDASHAIGGRYKGKAIGNCRYSDITVFSFHPV 209

Query: 184 SALCCGEGAMLVTDDPELASELHYMRNRNLA-DRQSIAVASRVP---------MQASMSD 233
             +  GEG M +T+DPEL + +  +R+  +  D   +  A   P             M+D
Sbjct: 210 KIITTGEGGMALTNDPELYNHMARLRSHGITRDPAEMTQAPDGPWYYQQIELGFNYRMTD 269

Query: 234 LSAAIGIAQLERLDEILMRRKQVEAYYLEHVQFFEGIKPPYIGPDVEEVYWMLYLVHLGT 293
           + AA+G++Q++RLDE +  R ++   Y E ++      P   G     ++  LY+V L  
Sbjct: 270 IQAALGLSQMQRLDEFVATRHELAKNYNELLKKCPVTIPWQHGDSYSGLH--LYVVRLKL 327

Query: 294 RFTRTMRNQIIEDLASQEVEAAAWCQPLHQQFYYSRFGCKRGDLLLTEKIADRCIALPLH 353
             T    ++I E L    +       P+++Q YY+R G    D    E+     I+LP+ 
Sbjct: 328 EATNASHHEIFERLRVAGIGVNLHYIPVYRQPYYARQGFNPSDFPEAERYYAEAISLPMF 387

Query: 354 GHLNTDEVHFIVQA 367
             L  ++   +V +
Sbjct: 388 PALTKEQQKEVVHS 401


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.134    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 724,302
Number of extensions: 29247
Number of successful extensions: 103
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 99
Number of HSP's successfully gapped: 1
Length of query: 382
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 299
Effective length of database: 726,862
Effective search space: 217331738
Effective search space used: 217331738
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 129 (54.3 bits)