BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2345.p
         (134 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095281|ref|YP_001100356.1| putative globin [Herminiimonas ...   112   6e-27

>gi|134095281|ref|YP_001100356.1| putative globin [Herminiimonas
           arsenicoxydans]
          Length = 133

 Score =  112 bits (281), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 55/119 (46%), Positives = 74/119 (62%)

Query: 15  YQQIGGEPIVRQLVDRFYALMEQLPQAAVVRAMHPADLAPAKQRLFMFLSGWLGGPPLYA 74
           Y+ + G   +R LVDRFY LM+  P  A +R MHP  L  ++ +LF FLSGW GGP L+ 
Sbjct: 12  YELLDGASGLRALVDRFYDLMDLEPAFAGIRGMHPTTLDGSRDKLFWFLSGWTGGPNLFV 71

Query: 75  EAFGHPRLRHAHAGFAIDAAARDAWMACMNQALQELVPDEVLRQQLGAAFFKTADFLCN 133
           E FGHPRLR  H  +AI    RD W+ CM  A+Q++     L++ L  AF +TAD++ N
Sbjct: 72  ERFGHPRLRARHLPYAIATDERDQWLRCMEMAMQDVGIVPSLQEHLQKAFAETADWMRN 130


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.325    0.137    0.432 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 237,267
Number of extensions: 7695
Number of successful extensions: 29
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 29
Number of HSP's successfully gapped: 1
Length of query: 134
Length of database: 1,000,347
Length adjustment: 72
Effective length of query: 62
Effective length of database: 763,107
Effective search space: 47312634
Effective search space used: 47312634
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 124 (52.4 bits)