BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2333.p
         (251 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096586|ref|YP_001101661.1| molybdate-binding periplasmic p...   317   2e-88

>gi|134096586|ref|YP_001101661.1| molybdate-binding periplasmic
           protein precursor [Herminiimonas arsenicoxydans]
          Length = 251

 Score =  317 bits (813), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 152/229 (66%), Positives = 186/229 (81%)

Query: 21  AEEIHVAVAANFTQPFKQIAAAFEQATGNKVVAAFGSTGQFYAQINNGAPFEILLAADAD 80
           AEE+ VAVAANFT P K IAA FE+ATG+K V +FGSTG+FY+QI NGAPFE+ LAAD +
Sbjct: 23  AEEVQVAVAANFTAPMKAIAADFEKATGHKTVLSFGSTGKFYSQITNGAPFEVFLAADDE 82

Query: 81  TPALLEKQKTAVAGTRFTYARGKLVLWSAKPGVVDAQGEILKKGAFEHLSLANPKLAPYG 140
           TP  LEK+   VAG+RFTYA GKLVLWSAKP  VDA+GEILKKG+F+H++LANPKLAPYG
Sbjct: 83  TPIKLEKENGIVAGSRFTYAIGKLVLWSAKPDFVDAKGEILKKGSFDHIALANPKLAPYG 142

Query: 141 LAGVQTMQKLGLEETLRPKIVQAENINQAYQFIASGNALLGFVALSQVVRNGQIADGSAW 200
            A V+TM KLG++E L+PK VQ ++I QA+ F+++GNA LGFVALSQV   G+I  GSAW
Sbjct: 143 AAAVETMNKLGVQEKLQPKFVQGDSIGQAFSFVSTGNAELGFVALSQVYEGGKIKSGSAW 202

Query: 201 IVPAELYAPILQDAVLLEKGRDHPAALALMTYLKSEPARQVIRGYGYEL 249
           IVP  L+  I QDAV+L KG+D+ AA AL+ YLKSEPA+ VIR +GY+L
Sbjct: 203 IVPGNLHNAIRQDAVILSKGKDNKAASALIEYLKSEPAKAVIRSFGYDL 251


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.134    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 446,926
Number of extensions: 16404
Number of successful extensions: 58
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 1
Length of query: 251
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 172
Effective length of database: 740,042
Effective search space: 127287224
Effective search space used: 127287224
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)