BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2332.p (250 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096585|ref|YP_001101660.1| molybdenum ABC transporter perm... 311 2e-86 gi|134095673|ref|YP_001100748.1| thiosulfate ABC transporter mem... 100 5e-23 gi|134094076|ref|YP_001099151.1| sulfate ABC transporter membran... 98 4e-22 gi|134094077|ref|YP_001099152.1| sulfate ABC transporter membran... 80 8e-17 gi|134095674|ref|YP_001100749.1| thiosulfate permease W [Hermini... 63 1e-11 >gi|134096585|ref|YP_001101660.1| molybdenum ABC transporter permease [Herminiimonas arsenicoxydans] Length = 224 Score = 311 bits (797), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 154/223 (69%), Positives = 186/223 (83%) Query: 3 LTAEDWSAVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVL 62 L ++ A+ LTL LA + TV+LL++GTPLAWWLAR+RS + V A+VALPLVLPP+VL Sbjct: 2 LNDPNFDAIFLTLKLAGLTTVILLVIGTPLAWWLARSRSWIKGPVGAIVALPLVLPPSVL 61 Query: 63 GFYLLVLMGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAMGERP 122 GFYLLV MGP GP+G+LTQALG+ LPFSF GLV+ S+ YSMPFVVQP+QNAFEAMGERP Sbjct: 62 GFYLLVTMGPDGPIGKLTQALGISPLPFSFAGLVVGSVFYSMPFVVQPIQNAFEAMGERP 121 Query: 123 MEVAATLRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLS 182 +EVAATLRASPLD FF+V +PLA PG+LTA V+GFAHTVGEFGVVLMIGGNIP +TR++S Sbjct: 122 LEVAATLRASPLDTFFSVTLPLAKPGYLTAIVMGFAHTVGEFGVVLMIGGNIPKETRLIS 181 Query: 183 MQIYDHVEAFEYAQAHRLAGAMLVFSFLVLLVMMRLGRAGKTR 225 +QIYDHVEA EYAQAH LA M+VF+ LVL+ + L G+ + Sbjct: 182 VQIYDHVEALEYAQAHWLAAGMVVFALLVLVALYTLNPTGRRK 224 >gi|134095673|ref|YP_001100748.1| thiosulfate ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 281 Score = 100 bits (250), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 63/188 (33%), Positives = 101/188 (53%), Gaps = 1/188 (0%) Query: 10 AVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGFYLLVL 69 + ++TL A TV++ +G LAW + R R + ++V LP LP +V G L VL Sbjct: 63 SYKVTLMGAFYSTVIVTFIGFLLAWIITRYDFPGRRLIDSLVDLPFALPTSVAGVTLSVL 122 Query: 70 MGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAMGERPMEVAATL 129 P G +GQ G+ + ++F G+V+A + S+PF+V+ +Q E M E A L Sbjct: 123 FMPTGWLGQWFDIFGIKI-SYAFPGIVVAMIFTSLPFIVRSVQPVLEDMENELEEAALML 181 Query: 130 RASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLSMQIYDHV 189 A+ F+ V +P P +T + F ++GEFG V+MI GNIP +T V S+ ++ + Sbjct: 182 GANKWQIFWRVILPTLIPALITGSSQAFIRSLGEFGAVIMIAGNIPFQTEVTSLMLFVRL 241 Query: 190 EAFEYAQA 197 + + Y A Sbjct: 242 QEYNYPAA 249 >gi|134094076|ref|YP_001099151.1| sulfate ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 289 Score = 98.2 bits (243), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/222 (31%), Positives = 110/222 (49%), Gaps = 1/222 (0%) Query: 9 SAVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGFYLLV 68 ++ +LT + + V + G +AW L R + + A+V LP LP AV G L Sbjct: 68 ASYKLTFGASLLAAVFNAIFGGIVAWVLVRYTFPGKKMIDAMVDLPFALPTAVAGIALTA 127 Query: 69 LMGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAMGERPMEVAAT 128 L P G +G+ + +G+ + F+ G+++A +PFVV+ +Q E E A + Sbjct: 128 LYAPNGWIGRYLEMVGIKV-AFTPLGVIVALTFIGLPFVVRTIQPVLEDAERELEEAAVS 186 Query: 129 LRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLSMQIYDH 188 L AS F V P P LT L FA GE+G V+ I GN+P + + + I Sbjct: 187 LGASHWQTFTKVIFPTVLPALLTGFALAFARATGEYGSVIFIAGNMPMVSEITPLFIVTK 246 Query: 189 VEAFEYAQAHRLAGAMLVFSFLVLLVMMRLGRAGKTRLKAGK 230 +E ++YA A +A ML+ SFL+LL + L + R +A K Sbjct: 247 LEQYDYAGATAIAVVMLLASFLMLLTINVLQAWTRKRGQAEK 288 >gi|134094077|ref|YP_001099152.1| sulfate ABC transporter membrane protein [Herminiimonas arsenicoxydans] Length = 287 Score = 80.5 bits (197), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 54/187 (28%), Positives = 94/187 (50%), Gaps = 1/187 (0%) Query: 9 SAVRLTLSLASIVTVLLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAVLGFYLLV 68 SA++LTL A+I L L+ G +W +A+ + + ++ LP + P + G ++ Sbjct: 63 SAIKLTLITAAIAVPLNLIFGVAASWCIAKFDFRGKSFLLTLIDLPFSVSPVISGLIYVL 122 Query: 69 LMGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAMGERPMEVAAT 128 L G QG G + +L F+ G+VLA++ + PFV + L ++ G E A Sbjct: 123 LFGAQGWFGGWLIEHNIKIL-FAVPGIVLATIFVTFPFVARELIPLMQSQGSEEEEAALV 181 Query: 129 LRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVLSMQIYDH 188 L AS F+ V +P G L +L A +GEFG V ++ G+I G+T + +Q+ Sbjct: 182 LGASGWKTFWHVTLPNIKWGLLYGVILCNARAMGEFGAVSVVSGHIRGQTNTIPLQVEIL 241 Query: 189 VEAFEYA 195 ++++ Sbjct: 242 YNEYQFS 248 >gi|134095674|ref|YP_001100749.1| thiosulfate permease W [Herminiimonas arsenicoxydans] Length = 283 Score = 62.8 bits (151), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 54/180 (30%), Positives = 90/180 (50%), Gaps = 5/180 (2%) Query: 5 AEDW--SAVRLTLSLASIVTV-LLLLLGTPLAWWLARTRSGWRHGVAAVVALPLVLPPAV 61 +ED+ A+ LTL LA+++TV + L+ G LAW + R + +V +P P V Sbjct: 52 SEDYMQHALGLTL-LAAVLTVPINLVFGILLAWCVTHYDFFGRRLLITLVEIPYATSPVV 110 Query: 62 LGFYLLVLMGPQGPVGQLTQALGLGLLPFSFGGLVLASLLYSMPFVVQPLQNAFEAMGER 121 GF LV+ G +G +GQ + L+ F++ G+++ ++ + P++ + L + G Sbjct: 111 AGFCYLVVYGLEGVIGQWLYEKDVQLM-FAWPGIIMVTVFVTAPYIARILMPLMQKQGTE 169 Query: 122 PMEVAATLRASPLDAFFTVAVPLAGPGFLTAAVLGFAHTVGEFGVVLMIGGNIPGKTRVL 181 A +L A+ F V +P L AV+ A VGEFG V ++ G I +T L Sbjct: 170 EEIAALSLGATGWQIFRHVTLPNIKWALLYGAVITNARAVGEFGAVAVVSGTIMNQTLTL 229 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.325 0.139 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 328,096 Number of extensions: 10433 Number of successful extensions: 61 Number of sequences better than 1.0e-08: 9 Number of HSP's gapped: 61 Number of HSP's successfully gapped: 9 Length of query: 250 Length of database: 1,000,347 Length adjustment: 79 Effective length of query: 171 Effective length of database: 740,042 Effective search space: 126547182 Effective search space used: 126547182 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.6 bits) S2: 127 (53.5 bits)