BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2331.p (372 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-b... 380 e-107 gi|134094078|ref|YP_001099153.1| sulfate permease A protein chro... 144 8e-36 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 114 9e-27 gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC trans... 111 5e-26 gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding pro... 110 1e-25 >gi|134096584|ref|YP_001101659.1| molybdate ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 362 Score = 380 bits (977), Expect = e-107, Method: Compositional matrix adjust. Identities = 196/358 (54%), Positives = 253/358 (70%), Gaps = 4/358 (1%) Query: 15 IIARMAYGYGGAGEFQLDLDLKLPGQGVSALSGPSGCGKTTFLRCMAGLLRPSRGYLEVN 74 I AR Y F L +DL LPG+G++AL G SG GKTT LR +AGL R + YLEVN Sbjct: 8 IKARFKVNYQA---FTLTVDLALPGRGITALFGASGSGKTTCLRVIAGLERAADVYLEVN 64 Query: 75 GEVWQDSQRQYFLPTHRRALGYVFQEASLLPHLSVSRNLDYGARRSGAVSSAASRQKIID 134 GEVWQD FLPTH+R LGYVFQEASL HL+V RNL+YG RR + S + Sbjct: 65 GEVWQDDAHNIFLPTHQRPLGYVFQEASLFAHLNVQRNLEYGMRRIAKSARHVSLDHAVS 124 Query: 135 LLGIAALLQSMPSALSGGERQRVAMARALFTAPRLLLMDEPMAALDNERKRDILPYLERL 194 LL I LLQ P LSGGERQRVA+ARAL T+PR+LLMDEP+AALD +RK +I+PYLERL Sbjct: 125 LLDIGHLLQRKPDKLSGGERQRVAIARALATSPRILLMDEPLAALDAKRKAEIMPYLERL 184 Query: 195 RDELAIPILYISHHPEEIARLADTLVLMRQGRCLASGPLTTLLSRLDLPLAHAEDAGAVI 254 DEL IP+LY+SH +E+ARLAD LVL+ GR +ASG LL+RLDL +AH + A A++ Sbjct: 185 HDELDIPVLYVSHSADEVARLADHLVLLETGRVIASGATQDLLTRLDLEVAHGDAASALV 244 Query: 255 EAKVAAHDETYHLTRLVLAGGEIFVPRRELPVGQPVRLQIHARDVSLALSPSHDSSILNR 314 A ++AHD Y L+ +GG++ +P++ +GQ VR+++ ARDVSL+L+P DSSILN Sbjct: 245 TATISAHDPDYLLSSATFSGGQLLLPQQSATIGQQVRIRVQARDVSLSLAPQRDSSILNI 304 Query: 315 LSATVLKLAPAQHPAHVLVVLDAGGEQLLARITRRSCDQLALVPGQPVWAQIKSVALL 372 ++ATV +L+ V+V LDA G +LLARITR+SC + L PG+ ++AQIK +A+L Sbjct: 305 VAATVTELSD-DAAGQVMVGLDAKGTRLLARITRKSCVAMELAPGKSLYAQIKGIAIL 361 >gi|134094078|ref|YP_001099153.1| sulfate permease A protein chromate resistance ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 355 Score = 144 bits (363), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 80/206 (38%), Positives = 124/206 (60%), Gaps = 20/206 (9%) Query: 32 DLDLKLPGQGVSALSGPSGCGKTTFLRCMAGLLRPSRGYLEVNGEVWQDSQRQYFLPTHR 91 D+ L+ P ++AL GPSGCGKTT LR +AGL +P G + ++GE D+ ++ Sbjct: 20 DVSLEFPAGELTALLGPSGCGKTTLLRIIAGLEQPDHGQVLLDGE---DASARH---VRE 73 Query: 92 RALGYVFQEASLLPHLSVSRNLDYGARRSGAVSSAASR----------QKIIDLLGIAAL 141 R +G+VFQ +L H++V N+ +G R V AA+R K+++L+ + L Sbjct: 74 RQVGFVFQHYALFKHMTVFENIAFGLR----VRPAATRPSESVIKEKVTKLLELVQLDWL 129 Query: 142 LQSMPSALSGGERQRVAMARALFTAPRLLLMDEPMAALDNERKRDILPYLERLRDELAIP 201 P LSGG+RQR+A+ARAL PR+LL+DEP ALD + ++++ +L RL DEL + Sbjct: 130 ADRYPPQLSGGQRQRIALARALAVEPRVLLLDEPFGALDAKVRKELRRWLRRLHDELHVT 189 Query: 202 ILYISHHPEEIARLADTLVLMRQGRC 227 ++++H EE +AD +VLM +G Sbjct: 190 SIFVTHDQEEALEVADQIVLMNKGHV 215 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 114 bits (284), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 64/184 (34%), Positives = 103/184 (55%), Gaps = 2/184 (1%) Query: 42 VSALSGPSGCGKTTFLRCMAGLLRPSRGYLEVNGEVWQDSQRQYFLPTHRRALGYVFQEA 101 + L G SGCGKTT LR +AG + G + + G+ + S + R +G VFQ+ Sbjct: 46 IGCLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGK--EISNAHFTATPETRQIGVVFQDY 103 Query: 102 SLLPHLSVSRNLDYGARRSGAVSSAASRQKIIDLLGIAALLQSMPSALSGGERQRVAMAR 161 +L PHLSV+ N+ +G R+ A A ++ L+G+A+ + P LSGG++QRVA+AR Sbjct: 104 ALFPHLSVADNVGFGLRKLAAPERQARIAALLTLVGLASQGKKFPHELSGGQQQRVALAR 163 Query: 162 ALFTAPRLLLMDEPMAALDNERKRDILPYLERLRDELAIPILYISHHPEEIARLADTLVL 221 AL P LLL+DEP + LD + + + + + E+ + ++H E +AD + + Sbjct: 164 ALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVLVTHDQHEAFAIADQIGV 223 Query: 222 MRQG 225 M+ G Sbjct: 224 MQDG 227 >gi|134096011|ref|YP_001101086.1| spermidine/putrescine ABC transporter ATP-binding subunit [Herminiimonas arsenicoxydans] Length = 366 Score = 111 bits (278), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 69/202 (34%), Positives = 108/202 (53%), Gaps = 16/202 (7%) Query: 32 DLDLKLPGQGVSALSGPSGCGKTTFLRCMAGLLRPSRGYLEVNGEVWQDSQRQYFLPTHR 91 ++ L + L GPSGCGKTT LR +AG P G + ++G +P + Sbjct: 21 NISLSIEAGEFFTLLGPSGCGKTTLLRMIAGFDEPDAGKILLDGVDLTG------VPPEQ 74 Query: 92 RALGYVFQEASLLPHLSVSRNLDYGARRSGAVSSAASRQKI------IDLLGIAALLQSM 145 R + VFQ +L PH++V+ N+ + + S +QK+ + L G AA Sbjct: 75 RVVRTVFQNYALFPHMTVAGNIAFPLEMANTPKSEI-KQKVDEALEDVRLTGFAA---RY 130 Query: 146 PSALSGGERQRVAMARALFTAPRLLLMDEPMAALDNERKRDILPYLERLRDELAIPILYI 205 P LSGG+RQRV++ARAL T P+LLL+DEP++ALD + + + L L+ E+ I +Y+ Sbjct: 131 PHELSGGQRQRVSIARALVTRPKLLLLDEPLSALDAQLREQMQIELINLQKEVGITFVYV 190 Query: 206 SHHPEEIARLADTLVLMRQGRC 227 +H E L+ + +M +G Sbjct: 191 THDQAEALALSHRIAVMNKGNI 212 >gi|134095531|ref|YP_001100606.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 266 Score = 110 bits (275), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 65/191 (34%), Positives = 110/191 (57%), Gaps = 15/191 (7%) Query: 45 LSGPSGCGKTTFLRCMAGLLRPSRGYLEVNG-EVWQDSQRQYFLPTHR-RALGYVFQEAS 102 + GPSG GKTT L ++G+L+P+ G + V G ++WQ S+ L R +G+VFQ+ Sbjct: 75 IVGPSGSGKTTLLSIISGILKPNEGSVIVKGQDLWQLSKDD--LADFRLNTIGFVFQDYH 132 Query: 103 LLPHLSVSRNLDY-----GARRSGAVSSAASRQKIIDLLGIAALLQSMPSALSGGERQRV 157 L P L+ + N+ + A++ A +K +D++G+ + +P LSGGE+QRV Sbjct: 133 LFPRLTTAENVAIPLILKKNKWGDAITEA---KKYLDIVGLKERVDIVPVKLSGGEQQRV 189 Query: 158 AMARALFTAPRLLLMDEPMAALDNERKRDILPYL-ERLRDELAIPILYISHHPEEIARLA 216 A+ARA+ + P +L++DEP A+LD + R IL ++ +++ +E + I H I A Sbjct: 190 AIARAMVSHPSILILDEPTASLDGDTGRKILAFVHDQILNEKT--CILIVTHDTRIFEFA 247 Query: 217 DTLVLMRQGRC 227 D ++ M G+ Sbjct: 248 DRIMYMEDGKI 258 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.137 0.396 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 673,280 Number of extensions: 26588 Number of successful extensions: 232 Number of sequences better than 1.0e-08: 43 Number of HSP's gapped: 177 Number of HSP's successfully gapped: 45 Length of query: 372 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 289 Effective length of database: 726,862 Effective search space: 210063118 Effective search space used: 210063118 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 129 (54.3 bits)