BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2329.p
         (432 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095015|ref|YP_001100090.1| putative electron transfer flav...    82   5e-17

>gi|134095015|ref|YP_001100090.1| putative electron transfer
           flavoprotein-ubiquinone oxidoreductase [Herminiimonas
           arsenicoxydans]
          Length = 562

 Score = 82.0 bits (201), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 94/367 (25%), Positives = 157/367 (42%), Gaps = 47/367 (12%)

Query: 28  LKVLQIERGEYPGSKNVQGAILYSDALERIIPDFRE-DAPLERHIIEQRMWVLDDQSFIG 86
           + V  +E+G   G+  + GA++   AL  ++PD++E  APL   + E R   L +     
Sbjct: 52  VSVCILEKGGELGAHILSGAVMDPQALTELLPDWKELGAPLNTPVSEDRFLFLTESK--- 108

Query: 87  GNYRSEDFNKPP----YNRYTIIRAQFDKWFSQKVQEAGALLICETTVTDLLM--DGQRV 140
             Y++ +F  P     +  Y +  A   +W  Q+ +  G  +       ++L   DG  V
Sbjct: 109 -AYKTPNFLLPACFQNHGNYVVSLANVVRWLGQQAEALGVEVFPGFPAAEILYNEDGS-V 166

Query: 141 VGVQT-----DR---------VGGSIYADIVVLADG----VNSVLARKAGFRPELDPAEV 182
            GV T     DR         +G  ++A   + A+G    +   L  K     +  P   
Sbjct: 167 KGVATGNMGIDRAGQPTAAFQLGMELHAKYTLFAEGSRGHLGKQLMEKFNLNQDKAPQTY 226

Query: 183 ALAVKEIHFMPEETIASRFNVSGDAGVVIEMVG-KITKGMMGTGFLY---TNRDSVTIGV 238
            + +KE+       I    +    AG+VI   G  +     G  FLY    N+ +V   V
Sbjct: 227 GIGIKELW-----EIDPALH---QAGLVIHTAGWPLKNDTYGGSFLYHLENNQVAVGYVV 278

Query: 239 GCMLSDLKRQKCSPYQLLEDMKAHPAIAPLLEGGEMKEYAAHLIPEGGYHSIPCLYGSGW 298
           G   ++      SP++  +  K HP I+   +GG+   Y A  I  GG  S+P L   G 
Sbjct: 279 GLGYAN---PYLSPFEEFQRYKTHPEISKFFKGGKRISYGARAITAGGLQSLPKLVFGGG 335

Query: 299 IVVGDSGMFVNAVHREGSNLAMTSGRLAAETVIALRAEGLPMNERNLARYRAALNESFVI 358
            ++G    F+N    +GS+ A+ SG LAA+      A G   +E  L+ Y AA  +S++ 
Sbjct: 336 ALIGCEAGFLNGSRIKGSHAAIKSGMLAADAAFTALAAGRQYDE--LSAYPAAFEQSWLH 393

Query: 359 KDMKKYR 365
           +++   R
Sbjct: 394 EELHVAR 400


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.320    0.137    0.405 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 866,713
Number of extensions: 37082
Number of successful extensions: 136
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 134
Number of HSP's successfully gapped: 1
Length of query: 432
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 348
Effective length of database: 723,567
Effective search space: 251801316
Effective search space used: 251801316
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)