BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2328.p
         (364 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093871|ref|YP_001098946.1| electron transfer flavoprotein ...   131   4e-32

>gi|134093871|ref|YP_001098946.1| electron transfer flavoprotein
           subunit alpha [Herminiimonas arsenicoxydans]
          Length = 309

 Score =  131 bits (330), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 85/231 (36%), Positives = 127/231 (54%), Gaps = 11/231 (4%)

Query: 121 LLLGATAQGRDLAGSVATTLKTGLTADCTGLTIDMENRSMAASRPTFGGSLLCTILTLNY 180
           +L  ATA G+++   VA  L     ++ T +       +    RP + G+ + T+ + + 
Sbjct: 87  ILAPATAYGKNILPRVAARLDVAQISEITKVV-----SADTFERPFYAGNAIATVQSSD- 140

Query: 181 RPQMATVRPRVMAMPEPDRSRSGQIIEHPLCLVESDIITKVLEYIPDNQQEKPQLPFADI 240
             ++ TVR           S +   +E+   + +S   + V   +  +   +P+L  A I
Sbjct: 141 AIKVITVRTTTFDAAAAGGSAT---VENVTAVADSGKSSFVSRELATSA--RPELTAAKI 195

Query: 241 IVAGGRGMKRAENFQLIWDLAMVLGAEVGATRPVVQANWVQAERQVGQSGKTVRPKLYIA 300
           +V+GGRGM   E+F+++  LA  LGA +GA+R  V A +V  + QVGQ+GK V P LYIA
Sbjct: 196 VVSGGRGMGSEESFKILEPLADRLGAAMGASRAAVDAGYVPNDWQVGQTGKIVAPDLYIA 255

Query: 301 AGISGAIQHRVGMADSDVIIAINSDPNAPIFDFASYGIVGNAMTILPALTE 351
            GISGAIQH  GM DS  I+AIN DP APIF  A YGIVG+   ++P L +
Sbjct: 256 VGISGAIQHLAGMKDSKTIVAINKDPEAPIFSVADYGIVGDLFEVVPQLVK 306


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.135    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 729,049
Number of extensions: 31390
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 84
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 281
Effective length of database: 726,862
Effective search space: 204248222
Effective search space used: 204248222
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)