BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2325.p
         (376 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094470|ref|YP_001099545.1| 2-isopropylmalate synthase [Her...   206   1e-54
gi|134094267|ref|YP_001099342.1| 2-isopropylmalate synthase [Her...    70   1e-13

>gi|134094470|ref|YP_001099545.1| 2-isopropylmalate synthase
           [Herminiimonas arsenicoxydans]
          Length = 515

 Score =  206 bits (524), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 133/358 (37%), Positives = 189/358 (52%), Gaps = 14/358 (3%)

Query: 4   INDTTLRDGEQTAGVAFTAEEKIAIARALDEIGVPEMEIGIPIMGEAEIEVIQAIAALPL 63
           I DTTLRDGEQ+ G + T +EKI IAR L+ + V  +E G     + + E I AI+ +  
Sbjct: 10  IFDTTLRDGEQSPGASMTRDEKIRIARQLERLKVDIIEAGFAAASQGDFESIHAISGIIK 69

Query: 64  RSKTMVWGRMCEADLAAAARC----NADIVNLSMPVSDIHIQHKLQRDRDWVLAQIRYFL 119
            +      R  + D+A AA          ++  +  S +H++ KL+   D V  Q +  +
Sbjct: 70  DATVCSLSRANDKDIARAAEALKPAARKRIHTFLATSPLHMEKKLRMTPDQVFEQAKIAV 129

Query: 120 PKALDLGMEVCLGGEDSSRADLDFMLRVIETAQAAGARRFRFADTLGLLDPFATYEVIRQ 179
             A     +V    ED SR+D+DF+ RVIE     GA    FADT+G   P     ++R 
Sbjct: 130 RYARQFTDDVEFSPEDGSRSDMDFLCRVIEAVIKEGATTINFADTVGYAVPELYGNMLRT 189

Query: 180 LRQEVDIE----LEMHAHNDLGLATANTLAAIN-AGASHVNTTVNGLGERAGNAPLEEVV 234
           LR+ +         +H HNDLG+  AN+LA +   GA  V  T+NGLGERAGN  LEE+V
Sbjct: 190 LRERIPNSDKAVWSVHCHNDLGMGVANSLAGVMIGGARQVECTINGLGERAGNTALEEIV 249

Query: 235 MGLR---HLHGIESQVDTRSLPAISRLVAKASGKAVAPNKSIVGEAVFTHESGIHVDGLL 291
           M +R       +E  VD   +   S+LV++ +G AV PNKS+VG   F H SGIH DG+L
Sbjct: 250 MAVRTRKDYFNLEIGVDATQIVPTSKLVSQITGFAVQPNKSVVGANAFAHASGIHQDGVL 309

Query: 292 KNPANYEHFSPAELGRS-HHIVLGKHSGSRGVKDAFAKMGILL-SDSQAQAMLLRIRD 347
           K    YE     ++G S + IVLGK SG    K    ++GI + S +   A  +R ++
Sbjct: 310 KARDTYEIMRAEDVGWSANKIVLGKLSGRNAFKQRLEELGITMESAADTDAAFIRFKE 367


>gi|134094267|ref|YP_001099342.1| 2-isopropylmalate synthase
           [Herminiimonas arsenicoxydans]
          Length = 519

 Score = 70.1 bits (170), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 136/351 (38%), Gaps = 43/351 (12%)

Query: 7   TTLRDGEQTAGVAFTAEEKIAIARALDEIGVPEMEIGIPIMGEAEIEVIQAI-------- 58
           T LRDG Q+       ++K+     L +IG+ E+E+  P   + + + ++ +        
Sbjct: 3   TDLRDGNQSLIEPMNHDKKLRFFDMLVKIGLKEIEVAFPSASQTDFDFVRRLIEEKRIPD 62

Query: 59  -----AALPLRSKTMVWGRMCEADLAAAARCNADIVNLSMPVSDIHIQHKLQRDRDWVLA 113
                   P R   +   R     +  A R    + N + P     I   + RD    LA
Sbjct: 63  DVTIEVLTPAREDLI---RRTVESVVGARRAIIHLYNATAPAFR-RIVFNMSRDEVKALA 118

Query: 114 Q-----IRYFLPKALDLGMEVCLGGEDSSRADLDFMLRVIE----TAQAAGARR--FRFA 162
                 +R       +         E  S  +L+F   + +    T Q    R+  F   
Sbjct: 119 VAGAKLVRELTDAHPETEWVFQYSPEAFSMTELEFSKEICDAVSATWQPTPERKMIFNLP 178

Query: 163 DTLGLLDPFATYEVI----RQLRQEVDIELEMHAHNDLGLATANTLAAINAGASHVNTTV 218
            T+    P    + +    R L +   I + +H HND G A A    A+ AGA  V   +
Sbjct: 179 GTVEASTPNVYADQVEWMHRNLARRDSILISVHPHNDRGCAVAAAELAVMAGADRVEGCL 238

Query: 219 NGLGERAGNAPLEEVVMGLRHLHGIESQVDTRSLPAISRLVAKASGKAVAPNKSIVGEAV 278
            G GER GN  L  + + L +  GI   +D   + A+ + V + +   V P    VG+ V
Sbjct: 239 FGNGERTGNVDLVTLALNL-YSQGISPGLDFSDIDAVRQCVEECNQIPVHPRHPYVGDLV 297

Query: 279 FTHESGIHVDGLLKNPAN----------YEHFSPAELGRSHHIVLGKHSGS 319
           +T  SG H D + K  A           Y    PA+LGRS+  V+  +S S
Sbjct: 298 YTAFSGSHQDAIKKGFAQQQPDAIWEVPYMPVDPADLGRSYDAVIRVNSQS 348


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.133    0.378 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 600,772
Number of extensions: 21549
Number of successful extensions: 87
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 81
Number of HSP's successfully gapped: 2
Length of query: 376
Length of database: 1,000,347
Length adjustment: 83
Effective length of query: 293
Effective length of database: 726,862
Effective search space: 212970566
Effective search space used: 212970566
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 129 (54.3 bits)