BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2323.p (642 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095416|ref|YP_001100491.1| chaperone protein HscA [Hermini... 745 0.0 gi|134095815|ref|YP_001100890.1| molecular chaperone DnaK [Hermi... 431 e-122 gi|134093457|ref|YP_001098532.1| rod shape-determining protein M... 57 2e-09 >gi|134095416|ref|YP_001100491.1| chaperone protein HscA [Herminiimonas arsenicoxydans] Length = 620 Score = 745 bits (1924), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/639 (62%), Positives = 490/639 (76%), Gaps = 20/639 (3%) Query: 1 MSLLQIAEPGRSTAPHQHRLAVGIDLGTTNSLVATVQSGQARILPDEAGQALLPSVVRYL 60 M+LLQIAEPG STAPHQHRLAVGIDLGTTNSLVATV++ IL DE G++LLPSVV YL Sbjct: 1 MALLQIAEPGMSTAPHQHRLAVGIDLGTTNSLVATVRNSIPEILTDEEGRSLLPSVVHYL 60 Query: 61 PAHSLQPADRPPTVVGHAAKAAQSDDPRNTLSSIKRLMGRDRADISAGNSADMPYAFIDK 120 S +G+ A+AAQ+ DP+NT+ S+KR MGR DI+ ++PY F+D Sbjct: 61 KNGSAH--------IGYKAQAAQNTDPKNTIVSVKRFMGRGLKDIAYAE--NLPYDFLDT 110 Query: 121 PGLVQIDTAAGIKTPIDVSADILRVLRQRAEASLGGELSGAVITVPAYFDDAQRQATKDA 180 PG+VQ+ T AG+K+P++VSA+IL LRQ+AE +LG +L GAVITVPAYFDDAQRQATKDA Sbjct: 111 PGMVQLKTVAGVKSPVEVSAEILATLRQQAEDALGDDLVGAVITVPAYFDDAQRQATKDA 170 Query: 181 ARLAGLNVLRLLNEPTAAAIAYGLDQAAEGVFAIYDLGGGTFDISILKLSRGVFEVLATN 240 A+LAGLNVLRLLNEPTAAAIAYGLD +EGVFA+YDLGGGTFD+SILKL++GVFEVL+T Sbjct: 171 AKLAGLNVLRLLNEPTAAAIAYGLDNGSEGVFAVYDLGGGTFDVSILKLTKGVFEVLSTG 230 Query: 241 GDGALGGDDFDRCIHDWVLDQSPLASAGLTSQDTRRLLTAARQAKETLSRETSATIELNL 300 GD ALGGDDFD + W+++Q+ LA L+ DT L+ AR+AKE LS ++ I+ L Sbjct: 231 GDSALGGDDFDHRLFCWIIEQAGLAP--LSEIDTSVLMVKAREAKELLSSKSETLIDAVL 288 Query: 301 SSGQAVQLALTREVFASISQGLLARTLLPTRKALRDAGLGVSEIDGVVLVGGSTRMPQVR 360 +SG+ V + +T F ++Q L+ +T+ PT+KALRDAGL V ++DGVV+VGG+TRMP +R Sbjct: 289 TSGEEVHVTVTAADFIQMTQHLVTKTITPTKKALRDAGLSVDDVDGVVMVGGATRMPHIR 348 Query: 361 AAVADFFGQPPLTDLDPDQVVALGAAMQANVLAGNRQQSD-WLLLDVCPLSLGLETMGGL 419 AV DFF PL ++DPD+VVALGAA+QAN+LAGNR D WLLLDV PLSLG+ETMGGL Sbjct: 349 KAVGDFFQSTPLANIDPDKVVALGAAVQANLLAGNRAAGDDWLLLDVIPLSLGIETMGGL 408 Query: 420 VEKIIPRNSTIPVARAQEFTTFKDGQTAMSVHVLQGERELVADCRSLARLELRGIPPMVA 479 VEK+IPRNSTIP ARAQEFTTFKDGQTA++VH++QGERELV DCRSLA+ ELRGIPPM A Sbjct: 409 VEKVIPRNSTIPCARAQEFTTFKDGQTALAVHIVQGERELVTDCRSLAKFELRGIPPMAA 468 Query: 480 GAARIRVTFQIDADGLLSVSAREQSTGVEAAVTVKPSYGLDDANIARMLSEAAGHATDDM 539 GAARIRVT+Q+DADGLLSVSARE +GVEA+++VKPSYGL D IA+ML ++ A DM Sbjct: 469 GAARIRVTYQVDADGLLSVSARELRSGVEASISVKPSYGLADDQIAQMLQDSFKSADVDM 528 Query: 540 KMRTLREAQVNARQVADATDAALKRDGHSLLSATEQAHIRQHLYALMELIETAREANDDN 599 R LRE QV A ++ AT +AL D SLLS E R+ + AL++ + A D Sbjct: 529 AARALREEQVEAERIVLATQSALDADA-SLLSDNE----REDIVALLDSVRQAGSGTDH- 582 Query: 600 IAALGRACDALNQATQEFAARRMNASVSLALSGQRLDAI 638 A+ A DAL T+EFAARRM+ SV ALSG++LD I Sbjct: 583 -LAIKAAVDALAHGTEEFAARRMDRSVRSALSGKKLDEI 620 >gi|134095815|ref|YP_001100890.1| molecular chaperone DnaK [Herminiimonas arsenicoxydans] Length = 649 Score = 431 bits (1107), Expect = e-122, Method: Compositional matrix adjust. Identities = 249/611 (40%), Positives = 381/611 (62%), Gaps = 34/611 (5%) Query: 22 VGIDLGTTNSLVATVQSGQARILPDEAGQALLPSVVRYLPAHSLQPADRPPTVVGHAAKA 81 +GIDLGTTNS VA ++ G+ +++ + G PSV+ Y + +VG AK Sbjct: 5 IGIDLGTTNSCVAIMEGGKPKVIENSEGARTTPSVIAYQEDGEI--------LVGAPAKR 56 Query: 82 AQSDDPRNTLSSIKRLMGR--DRADISAGNSADMPYAFID-KPGLVQIDTAAGIKTPIDV 138 +P+NTL ++KRL+GR D ++ + MPY + G I P + Sbjct: 57 QAVTNPKNTLYAVKRLIGRKFDEKEVQK-DIGMMPYQIVKADNGDAWISVRDKKLAPPQI 115 Query: 139 SADILRVLRQRAEASLGGELSGAVITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAA 198 SA+ LR +++ AE LG E++ AVITVPAYF+DAQRQATKDA R+AGL+V R++NEPTAA Sbjct: 116 SAETLRKMKKTAEDYLGEEVTEAVITVPAYFNDAQRQATKDAGRIAGLDVKRIINEPTAA 175 Query: 199 AIAYGLDQAAEG--VFAIYDLGGGTFDISILKLS----RGVFEVLATNGDGALGGDDFDR 252 A+A+GLD+ +G A+YDLGGGTFDISI++++ FEVL+TNGD LGG+DFD+ Sbjct: 176 ALAFGLDKTGKGDRKIAVYDLGGGTFDISIIEIADVDGEMQFEVLSTNGDTFLGGEDFDQ 235 Query: 253 CIHDWVLDQSPLASAGLTSQDT---RRLLTAARQAKETLSRETSATIELN-----LSSGQ 304 + D+++D+ + S+D +R+ +A +AK LS +S E+N +++G Sbjct: 236 RVIDYIIDEFKKINGLDLSKDAIALQRIKASAERAKIELS--SSQQTEINEPYIAMANGA 293 Query: 305 AVQLAL--TREVFASISQGLLARTLLPTRKALRDAGLGVSEIDGVVLVGGSTRMPQVRAA 362 V L + TR S+ + L+++TL P A++DAG+ VS+ID ++LVGG TRMP+V+ Sbjct: 294 PVHLTMKITRAKLESLVEELISKTLAPLSIAIKDAGVKVSDIDDIILVGGMTRMPKVQEK 353 Query: 363 VADFFGQPPLTDLDPDQVVALGAAMQANVLAGNRQQSDWLLLDVCPLSLGLETMGGLVEK 422 V +FFG+ P D++PD+ VA+GAA+Q +VL+G+R+ D LLLDV PLSLG+ET+GG++ K Sbjct: 354 VKEFFGKEPRKDVNPDEAVAVGAAIQGSVLSGDRK--DLLLLDVTPLSLGIETLGGVMTK 411 Query: 423 IIPRNSTIPVARAQEFTTFKDGQTAMSVHVLQGERELVADCRSLARLELRGIPPMVAGAA 482 +I +N+TIP +Q F+T D Q A+++ V QGERE+ ++L L GIPP G Sbjct: 412 MIQKNTTIPTKFSQVFSTADDNQPAVTIKVFQGEREMAVGNKALGEFNLEGIPPSARGTP 471 Query: 483 RIRVTFQIDADGLLSVSAREQSTGVEAAVTVKPSYGLDDANIARMLSEAAGHATDDMKMR 542 +I VTF IDA+G+L V A++++TG E +T+K + GL + I +M+ +A +A +D +++ Sbjct: 472 QIEVTFDIDANGILHVGAKDKATGKENKITIKANSGLTEEEIQKMVQDAEANAEEDKRLK 531 Query: 543 TLREAQVNARQVADATDAALKRDGHSLLSATEQAHIRQHLYALMELIE-TAREANDDNIA 601 + EA + + +T +L G L A E+ I + L E ++ + + A D+ A Sbjct: 532 EVAEAHNHGDALVHSTRKSLTEYGDK-LEAGEKEKIEAAIKDLEEALKGSDKAAIDEKSA 590 Query: 602 ALGRACDALNQ 612 AL A L + Sbjct: 591 ALSAAAQKLGE 601 >gi|134093457|ref|YP_001098532.1| rod shape-determining protein MreB [Herminiimonas arsenicoxydans] Length = 347 Score = 57.4 bits (137), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 55/230 (23%), Positives = 104/230 (45%), Gaps = 13/230 (5%) Query: 162 VITVPAYFDDAQRQATKDAARLAGLNVLRLLNEPTAAAIAYGLDQAAEGVFAIYDLGGGT 221 +I VP +R+A +++A AG + L+ EP AAAI GL + + D+GGGT Sbjct: 112 IICVPCGSTQVERRAIRESALGAGAAQVYLIEEPMAAAIGAGLPVSDATGSMVVDIGGGT 171 Query: 222 FDISILKLSRGVFEVLATNGDGALGGDDFDRCIHDWVLDQSPLASAGLTSQDTRRLLTAA 281 ++ I+ L V++ G +GGD FD I +++ + T++ ++ + +A Sbjct: 172 TEVGIISLGGMVYK-----GSIRVGGDRFDEAIVNYIRRNYGMLIGEQTAEAIKKEIGSA 226 Query: 282 RQAKETLSRETSATIELNLSSGQAVQLAL-TREVFASISQ---GLLARTLLPTRKALRDA 337 E E NLS G + + E+ ++++ G+++ + + Sbjct: 227 FPGSEVREMEVKGR---NLSEGIPRSFTISSNEILEALTEPLNGIVSAVKNALEQTPPEL 283 Query: 338 GLGVSEIDGVVLVGGSTRMPQVRAAVADFFGQPPLTDLDPDQVVALGAAM 387 G ++E G++L GG + + + + G P + DP V G+ M Sbjct: 284 GADIAE-KGMMLTGGGALLRDLDRLLMEETGLPVIVAEDPLTCVVRGSGM 332 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.317 0.131 0.363 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,157,381 Number of extensions: 48969 Number of successful extensions: 183 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 172 Number of HSP's successfully gapped: 3 Length of query: 642 Length of database: 1,000,347 Length adjustment: 88 Effective length of query: 554 Effective length of database: 710,387 Effective search space: 393554398 Effective search space used: 393554398 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)