BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2321.p
         (120 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093528|ref|YP_001098603.1| iron-sulfur cluster insertion p...   164   1e-42
gi|134095418|ref|YP_001100493.1| factor involved in Fe-S cluster...    64   2e-12

>gi|134093528|ref|YP_001098603.1| iron-sulfur cluster insertion
           protein ErpA [Herminiimonas arsenicoxydans]
          Length = 116

 Score =  164 bits (415), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 73/107 (68%), Positives = 93/107 (86%)

Query: 13  APLIFTDSAVAKVSELISEEGNADLKLRIYVSGGGCSGFEYGFAFDDAVNEDDFCIERNG 72
           +P++F+DSA AKV+ELI +EGN DLKLR++V GGGCSGF+YGF FD+ VNEDD  + +NG
Sbjct: 9   SPILFSDSAAAKVAELIEDEGNPDLKLRVFVQGGGCSGFQYGFTFDEIVNEDDTTMTKNG 68

Query: 73  VSLLVDAMSMQYLNGAEIGYEEGLEGSRFIIKNPNATTTCGCGSSFS 119
           V LL+D+MS QYL GAEI Y++ LEG++F+IKNPNATTTCGCGSSF+
Sbjct: 69  VQLLIDSMSYQYLVGAEIDYKDDLEGAQFVIKNPNATTTCGCGSSFT 115


>gi|134095418|ref|YP_001100493.1| factor involved in Fe-S cluster
           assembly and activation [Herminiimonas arsenicoxydans]
          Length = 107

 Score = 63.9 bits (154), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 37/108 (34%), Positives = 54/108 (50%), Gaps = 5/108 (4%)

Query: 15  LIFTDSAVAKVSELISEEGNADLKLRIYVSGGGCSGFEYGFAFDDAVNEDDFCIERNGVS 74
           +  T+ A   ++  +   G   + LR  V   GCSG  Y   + D    +D   E +GV 
Sbjct: 3   ITLTEKAAKHINRYMERRGKG-IGLRFGVRTTGCSGLAYKLEYVDESASEDSVFESHGVK 61

Query: 75  LLVDAMSMQYLNGAEIGY-EEGL-EGSRFIIKNPNATTTCGCGSSFSV 120
           + VD  S+ Y++G E+ +  EGL EG +F   NPN    CGCG SF +
Sbjct: 62  VFVDPKSLPYIDGTELDFAREGLNEGFKF--HNPNVKDECGCGESFRI 107


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.135    0.390 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 202,171
Number of extensions: 7356
Number of successful extensions: 26
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 26
Number of HSP's successfully gapped: 2
Length of query: 120
Length of database: 1,000,347
Length adjustment: 71
Effective length of query: 49
Effective length of database: 766,402
Effective search space: 37553698
Effective search space used: 37553698
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 123 (52.0 bits)