BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2320.p
         (149 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095419|ref|YP_001100494.1| iron-sulfur template protein Is...   227   2e-61

>gi|134095419|ref|YP_001100494.1| iron-sulfur template protein IscU
           [Herminiimonas arsenicoxydans]
          Length = 134

 Score =  227 bits (578), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 105/128 (82%), Positives = 118/128 (92%)

Query: 1   MAYSDKLMDHYENPRNVGSFDKDDTSVATGMVGAPACGDVMKLQIKVDHNGIIEDAKFKT 60
           MAYSDK++DHYENPRNVG+FDK D ++ TGMVGAPACGDVMKLQIKV  +G+IEDAKFKT
Sbjct: 1   MAYSDKVLDHYENPRNVGAFDKGDETIGTGMVGAPACGDVMKLQIKVGADGVIEDAKFKT 60

Query: 61  YGCGSAIASSSLVTEWLKGRTLDQALDIKNTAIADELALPPVKIHCSILAEDAIKAAVAD 120
           YGCGSAIASSSLVTEW+KG+TLDQAL IKNT IA+ELALPPVKIHCSILAEDAIKAAV D
Sbjct: 61  YGCGSAIASSSLVTEWVKGKTLDQALSIKNTQIAEELALPPVKIHCSILAEDAIKAAVLD 120

Query: 121 YRSRHDAA 128
           Y+++H  A
Sbjct: 121 YKTKHGVA 128


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.316    0.131    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 249,378
Number of extensions: 8511
Number of successful extensions: 31
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 31
Number of HSP's successfully gapped: 1
Length of query: 149
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 75
Effective length of database: 756,517
Effective search space: 56738775
Effective search space used: 56738775
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 124 (52.4 bits)