BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2319.p
         (407 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095420|ref|YP_001100495.1| tRNA 4-thiouridine sulfurtransf...   640   0.0  

>gi|134095420|ref|YP_001100495.1| tRNA 4-thiouridine
           sulfurtransferase [Herminiimonas arsenicoxydans]
          Length = 417

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 300/400 (75%), Positives = 344/400 (86%)

Query: 8   LPIYLDYSATTPVDPRVAQKMIPYLTDIPGNPASRSHSFGWAAEAAVEHAREQVAALVNA 67
            PIY+DYSATTP+DPRVA KMIPYL +  GNPASRSH +GW AE AVE AREQVA LVNA
Sbjct: 18  FPIYMDYSATTPIDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEDAREQVAKLVNA 77

Query: 68  DVREIIWTSGATESNNLAIKGAAEFLRSKGRHLITVKTEHKAVLDTMRELERRGFEVTYL 127
           D REIIWTSGATE NNLA+KGAA+F ++KG+H+ITVKTEHKAVLDT+RELER+GFE TYL
Sbjct: 78  DPREIIWTSGATEGNNLALKGAAQFYKTKGKHIITVKTEHKAVLDTVRELERQGFEATYL 137

Query: 128 EVGSDGLLDLVAFEAALRPDTILASVMYVNNEIGVIQDIAALGDICRARGVLLHVDAAQA 187
           +   +GL+ +     A+RPDTIL SVM VNNEIGVIQ I  +G++CR++G++ H DAAQA
Sbjct: 138 QPQDNGLITIEQLAEAIRPDTILVSVMLVNNEIGVIQPIDEIGELCRSKGIIFHCDAAQA 197

Query: 188 TGKVAIDLASLKVDLMSFSAHKTYGPKGIGALYVGRKPRVRLEAQMHGGGHERGLRSGTL 247
           TGKV IDL   KVDLM+F+AHKTYGPKGIGALYV RKPR+R+EAQMHGGGHERGLRSGTL
Sbjct: 198 TGKVKIDLEKSKVDLMTFTAHKTYGPKGIGALYVRRKPRIRIEAQMHGGGHERGLRSGTL 257

Query: 248 ATHQIVGMGEAFELARLAMGTENERIRMLRDRLHAGFADIEECFVNGDLERRVPHNLNVS 307
           ATHQIVGMGEAF +AR  M  E  RI  LRDRL  G  D+EE ++NGD++ RVPHNLNVS
Sbjct: 258 ATHQIVGMGEAFRIAREEMDEEIVRITALRDRLAKGLMDMEEVYINGDMDHRVPHNLNVS 317

Query: 308 FNYVEGESLLMAIKDVAVSSGSACTSASLEPSYVLRALGMSDELAHSSIRFSIGRFTTIE 367
           FNYVEGESL+MAIKD+AVSSGSACTSASLEPSYVLRALG SDELAHSSIRF+ GRFTT E
Sbjct: 318 FNYVEGESLIMAIKDLAVSSGSACTSASLEPSYVLRALGRSDELAHSSIRFTFGRFTTEE 377

Query: 368 EIDFTVNVIREKVGKLRALSPLWDMYKDGIDLSTVQWAAH 407
           ++DFT+ +I+EKV KLR LSPLWDMYKDGID+ST+QWAAH
Sbjct: 378 DVDFTIKLIKEKVAKLRELSPLWDMYKDGIDISTIQWAAH 417


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.134    0.384 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 758,915
Number of extensions: 30841
Number of successful extensions: 112
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 112
Number of HSP's successfully gapped: 1
Length of query: 407
Length of database: 1,000,347
Length adjustment: 84
Effective length of query: 323
Effective length of database: 723,567
Effective search space: 233712141
Effective search space used: 233712141
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 130 (54.7 bits)