BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2312.p
         (291 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134096247|ref|YP_001101322.1| hypothetical protein HEAR3092 [...   107   5e-25

>gi|134096247|ref|YP_001101322.1| hypothetical protein HEAR3092
           [Herminiimonas arsenicoxydans]
          Length = 807

 Score =  107 bits (268), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 77/265 (29%), Positives = 128/265 (48%), Gaps = 17/265 (6%)

Query: 33  FASIRFSPHETSA--PASRADTRRWLVTIQKEGEASVSQGGRHSHLRPGDMVLID----- 85
           F+++  SP   SA  PA    T   +V +  EG   +  G   + +  GD+ L+D     
Sbjct: 58  FSTLNASPQAFSARDPAMLTRTNSVIVFVLFEGVGQIDVGAETAAVSAGDIYLLDSSRQW 117

Query: 86  ---LGSPFRIETGHMVTHSTYVDSELLKRVMPDADRRTAVRIETACGPGAIFRAMSDEMF 142
              L S FR     +        +  + R+M    +    +I +A G G I     + + 
Sbjct: 118 KLALTSAFRASVIRLEK------ANFISRLM-HTGKTDICKISSASGVGNIALEFVNAIT 170

Query: 143 EMATELDENTAARIAQALPYSLAIALSHCDKEMMACPSRLQLFHLERIRAFVRDNLHDSS 202
                L      ++  AL   L  +L+H ++E ++  + +QL HL RI   +   L D  
Sbjct: 171 CQLASLGSGDLEQMEDALSTMLVASLAHKEEEDVSHSTSMQLSHLRRICRTIEARLTDPE 230

Query: 203 LDAEMISQAVQLSTRHIYQLFTAEQTSLMKWVWSERLERCREDLVSRQLSNRPIGEIAYG 262
           L A  I+++ QLS R++ +LF +  T+  ++V   RL+RCR DL +  L +  I E+ + 
Sbjct: 231 LSAIDIARSEQLSARYLQKLFASAGTTFGEYVKKRRLDRCRIDLSNLSLKHLTISELCFR 290

Query: 263 WGFSDVAHFSRAFKEKFNMTPRAYR 287
           WGF+D A+FSRAF  +F ++P+ YR
Sbjct: 291 WGFNDAANFSRAFHLEFGISPKGYR 315


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.322    0.132    0.393 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 509,999
Number of extensions: 18434
Number of successful extensions: 47
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 46
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 210
Effective length of database: 733,452
Effective search space: 154024920
Effective search space used: 154024920
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 128 (53.9 bits)