BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2311.p (370 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095723|ref|YP_001100798.1| putative porin transmembrane pr... 118 4e-28 gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas a... 92 5e-20 gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas a... 57 2e-09 >gi|134095723|ref|YP_001100798.1| putative porin transmembrane protein [Herminiimonas arsenicoxydans] Length = 392 Score = 118 bits (296), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 128/411 (31%), Positives = 177/411 (43%), Gaps = 79/411 (19%) Query: 11 IAALALWPAATW---AQSSVSISGIMDGGVSYVSNQAGSSNLRADNGIGAPNILFIKGQE 67 +AAL L+ AQ+ V+I GI D + Y SNQ G+SN +G A + + KG E Sbjct: 10 VAALTLYTGVLQNAGAQNGVTIYGIADVAMVYSSNQGGASNTYMRSGNLAGSRIGFKGTE 69 Query: 68 DLGGGTAAIFQLESQFNLSTGASLPGNNLIFGRQSLVGLKDKQWGTLTAGNQYEFMHDSL 127 DLGGGT AIFQLES FNL TG + ++ +F RQ+ VG+ + ++G LTAG QY Sbjct: 70 DLGGGTQAIFQLESGFNLDTG-EMSSSSTLFNRQAFVGINNTRYGALTAGRQYT------ 122 Query: 128 LFGGFDSALTYGGYYTFRQGPFSALAIPNNPTGAS--DFDRVAGSSRVANSVKYLSPDVS 185 YY F GP TGA D D + + R NS+ Y SP + Sbjct: 123 ------------PYYLF-VGPIGPTNSLTGATGAHPGDIDGLDTTIRSNNSITYTSPVWN 169 Query: 186 GVTFGGMYGFGEVAGDTASSRTVSLGANY----------------AEGPFGLGVAYTDAR 229 G+ + GFGE AGD S RT+S Y + P G+ A Sbjct: 170 GLQVSALAGFGETAGDMGSGRTISAAIKYDINNWNFALGYQRLNNSNNPGGVWSPNASAN 229 Query: 230 Y--SSMNSGH---DGIRNWGLGARYQIG-----------DYKL--NLLYTNTRNTQTAGQ 271 + S +N+G+ D + ARY +G +Y+ N L+T T G Sbjct: 230 FNTSPVNNGYLSADSAQYLAGAARYTMGKVIVGANASRVEYRPNGNSLFTQKATFDTLGL 289 Query: 272 VNVYQAGVNWQMAVAWNLGLSYEYMQGNAQLANNYA-----HQGSATLQYWLSKRTDVYL 326 + Y QM + + + Y Y + A AN + HQ + Y SKRT +Y Sbjct: 290 LTGY------QMTPVFFVSVGYSYTKEKA--ANGISDPAKYHQLALEQTYSFSKRTAIYF 341 Query: 327 QTVYQKA-------GGDNTNTQAWINGLYGPKAMSSSSSQAIFRVGLVTRF 370 YQ A GG + G S ++QA+F VG+ F Sbjct: 342 LEAYQVAKGNTLGLGGSGPVRAVAVVGDSQNGTPSDGANQAVFMVGIRHSF 392 >gi|134093519|ref|YP_001098594.1| putative porin [Herminiimonas arsenicoxydans] Length = 357 Score = 92.0 bits (227), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 107/385 (27%), Positives = 168/385 (43%), Gaps = 48/385 (12%) Query: 5 RRQSAAIAALALWPAATWAQSSVSISGIMDGGVSYVSNQAGSSNLRADNGIGAPN----I 60 ++ A+A L + A AQSSV++ GI+D G++ AG+++ NG+ + N Sbjct: 2 KKSLLALAVLGAFAGAASAQSSVTVYGIVDMGITSQDTGAGANDRL--NGVTSGNQSASR 59 Query: 61 LFIKGQEDLGGGTAAIFQLESQFNLSTGA-SLPGNNLIFGRQSLVGLKDKQWGTLTAGNQ 119 + KG EDLG G A F LE TG S F R + VGL +G + G Q Sbjct: 60 IGFKGTEDLGNGLKANFVLEQTIAADTGVLSQVDGKTAFNRFATVGLS-GNFGAVNLGRQ 118 Query: 120 YEFMHDSLLFGGFDSALTYGGYYTFRQGPFSALAIPNNPTGASDFDRVAGSSRVANSVKY 179 + D+ +D+ +G T P SA+ G + R++NS+KY Sbjct: 119 VSAIKDA-----YDAIDPFGDGGTI--APISAIFFNAALKG--------DNGRISNSIKY 163 Query: 180 LSPDVSGVTFGGMYGFGEVAGDTASSRTVSLGANYAEGPFGLGVAYTDARYSSMNS-GHD 238 S SG FG Y FGE AG T + L YA GP + Y S+ + G Sbjct: 164 TSNSYSGFKFGAHYAFGEQAGRTGADSNYGLNLGYANGPLNVQFGYMSGDDSTAGAPGFK 223 Query: 239 GIRNWG-----LGARYQIGDYKLNLLYTNTRNTQTAGQVN----VYQAGVNWQMAVAWNL 289 ++N LGA Y G KL+ Y +++N AG V+ Y GV+ ++ A ++ Sbjct: 224 PVKNSKDKMTFLGATYDFGVAKLHAAYGDSKNQPVAGNVDNKYRNYMLGVSAKVGAAGSI 283 Query: 290 GLSYEYMQ----GNAQLANNYAHQGSATLQYWLSKRTDVYLQTVYQKAGGDNTNTQAWIN 345 SY G + + + + + LSKRT++Y + + + A +N Sbjct: 284 MASYTVNDTRTFGGVKANDRDSKRAGIMYAHDLSKRTNLYAGYSHT-----SNDKNAKLN 338 Query: 346 GLYGPKAMSSSSSQAIFRVGLVTRF 370 A+ + S ++F VG+ +F Sbjct: 339 ------ALVADQSGSMFAVGVRHKF 357 >gi|134093520|ref|YP_001098595.1| putative porin [Herminiimonas arsenicoxydans] Length = 363 Score = 56.6 bits (135), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 91/209 (43%), Gaps = 15/209 (7%) Query: 23 AQSSVSISGIMDGGVSYVSNQA---GSSNLRADNGIGAPNILFIKGQEDLGGGTAAIFQL 79 A SS+S+ G +D G+ +V+N GS+ NG N L IKG E+LGGG F L Sbjct: 30 APSSISMYGTIDSGIRHVTNTTASGGSTTKLGSNGEYYNNRLGIKGMENLGGGLNMHFHL 89 Query: 80 ESQFNLSTGASLPGNNLIFGRQSLVGLKDKQWGTLTAGNQYEFMHDSLLFGGFDSALTYG 139 ES FN TG N +F R S +G+ +G+L G Q ++ A Sbjct: 90 ESGFNTGTGELDNKANRLFNRISSIGIAGS-FGSLDFGRQPSVACKAVY------AYEPF 142 Query: 140 GYYTFRQGPFSALAIPNNPTG--ASDFDRVAGSSRVANSVKYLSPDVSGVTFGGMYGFGE 197 Y P + A+ N G + F V G R +N +Y T Y GE Sbjct: 143 QYRYVHIIPLAG-AVAGNLDGRVSRPFGTVDG-PRFSNGAQYFG-KFGSFTASAEYIMGE 199 Query: 198 VAGDTASSRTVSLGANYAEGPFGLGVAYT 226 V G + ++G Y +G F +G AYT Sbjct: 200 VPGSNRNQAAKAVGLVYNDGTFTVGGAYT 228 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.315 0.131 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 721,725 Number of extensions: 31688 Number of successful extensions: 87 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 79 Number of HSP's successfully gapped: 4 Length of query: 370 Length of database: 1,000,347 Length adjustment: 83 Effective length of query: 287 Effective length of database: 726,862 Effective search space: 208609394 Effective search space used: 208609394 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 129 (54.3 bits)