BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2310.p (423 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134096402|ref|YP_001101477.1| hypothetical protein HEAR3249 [... 85 9e-18 gi|134094685|ref|YP_001099760.1| hypothetical protein HEAR1462 [... 81 8e-17 gi|134096431|ref|YP_001101506.1| putative oxalate/formate antipo... 69 3e-13 gi|134096395|ref|YP_001101470.1| putative transport protein [Her... 60 2e-10 gi|134095635|ref|YP_001100710.1| putative oxalate/formate antipo... 55 5e-09 >gi|134096402|ref|YP_001101477.1| hypothetical protein HEAR3249 [Herminiimonas arsenicoxydans] Length = 439 Score = 84.7 bits (208), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 107/387 (27%), Positives = 174/387 (44%), Gaps = 48/387 (12%) Query: 47 LFIRPLEADFGWSRTQIALASSIVSYTVMLISPIQGYLTDRFGARAVIVPCIPLFCVAVG 106 LF+ ++ FGW+R +I +A +I ++PI+GY D+ G R ++ +A Sbjct: 40 LFVPEIQGTFGWARAEIQIAFTIFVLVQTWLAPIEGYFIDKLGPRLMVAFGAIFIGMAWV 99 Query: 107 LMYFMPPVPWIYYAAWIALPVIGIGIFPLSYLRVVSSWFDKRLGLAIGIANAGIGIGGAV 166 + + Y+ A AL IG+G + + WF R GLA+G+ G G G A Sbjct: 100 VNSQATTLGGFYFGA--ALGGIGVGSIYATCINNALKWFPDRRGLAVGLTAGGYGAGSAA 157 Query: 167 IPLLIGAVIAHQGWRAGFVGLSALVALTLPLAYAFIREKPGTEPKKGRV-------QTVP 219 L I A+I G++ F+ L +A F+R P KG+V Q Sbjct: 158 TILPIAAMIESSGFQETFLFFGLLQGGLAFVAAWFLR-----SPAKGQVPASQKLLQATR 212 Query: 220 GVDFKTALRSREFKLLIGIFLLLGVINTALIVHQMPML-MDAGVTPQRAAM---VQATFG 275 K AL ++ F L+ +F+L+ V + V Q+ ++ D GV M V A Sbjct: 213 DYTLKEALNTKLFWLMFLMFILV-VTGGMMAVAQLGVIAQDLGVKEFEVDMYFFVMAALP 271 Query: 276 IFVIAGRLLTGL---LIDYIS------AVLVMCFLVLG------GTIACSLYAYGVTGNV 320 + ++ R++ G+ L +IS +V+ F + G G + +A+ + V Sbjct: 272 LALMLDRIMNGISRPLFGWISDNIGREKTMVIAFTLEGFGIIALGYFGHNPWAFLILSGV 331 Query: 321 VFLCAALLGMVLGAEFDVLSYLLKRYFGMRAFGKLYGVIFSVFQFGAGAGAALLP---LM 377 VFL G + + S L FG + GK+YGV+++ G GA +P LM Sbjct: 332 VFLA-------WGEVYSLFSALAGDAFGSKHIGKIYGVLYT----AKGIGALFVPVGNLM 380 Query: 378 RQASGSYRSGLTTFAIATLTCALLLIV 404 +A+G++ + L T A LT A+L IV Sbjct: 381 MEATGTWSTVLYTVACMDLTAAVLAIV 407 >gi|134094685|ref|YP_001099760.1| hypothetical protein HEAR1462 [Herminiimonas arsenicoxydans] Length = 425 Score = 81.3 bits (199), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 99/363 (27%), Positives = 156/363 (42%), Gaps = 25/363 (6%) Query: 23 WVVVLASMVALMFGPSTVAVLSL-GLFIRPLEADFGWSRTQIALASSIVSYTVMLISPIQ 81 WV+V + + ++ ++ A L L G+ ++PL +FGWS +I+ A ++ LI P Sbjct: 19 WVIVAITFLTML---TSSAALGLPGVLLQPLSREFGWSNDEISSAIALRFVLFGLIGPFA 75 Query: 82 GYLTDRFGARAVIVPCIPLFCVAVGLMYFMPPVPWIYYAAWIALPVIGIGIFPLSYLRVV 141 +RFG R VI + L + + L M + W + W + I G+ L VV Sbjct: 76 AIFMERFGLRNVITTALALVALCLALSTQMSAL-WHMFLLWGLILGIATGMTALVLGAVV 134 Query: 142 SS-WFDKRLGLAIGIANAGIGIGGAVIPLLIGAVIAHQGWRAGFVGLSALVALTLPLAYA 200 ++ WF+KR GL IG+ A G + + +I + GWR + + AL LA+ Sbjct: 135 ANRWFEKRRGLIIGLLTASSATGQLIFLPVAAWLIENHGWRMAVIPVFFCCALVAVLAFL 194 Query: 201 FIREKP--------GTEP------KKGRVQTV---PGVDFKTALRSREFKLLIGIFLLLG 243 FIR P G +P G P ++ R+R F +L G F + G Sbjct: 195 FIRNHPHDIGITAYGADPSVVLPMSPGTAHMTLWEPLKVLRSVSRNRTFWILAGTFFICG 254 Query: 244 VINTALI-VHQMPMLMDAGVTPQRAAMVQATFGIFVIAGRLLTGLLID-YISAVLVMCFL 301 + + LI H + + D G+ AA + A G F G +L+G L D Y + L+ + Sbjct: 255 LSTSGLIQTHFISLCGDYGMAAIPAAGMLAMMGAFDFVGTILSGWLSDRYDNRKLLFWYY 314 Query: 302 VLGGTIACSLYAYGVTGNVVFLCAALLGMVLGAEFDVLSYLLKRYFGMRAFGKLYGVIFS 361 L G L T + + A G+ A L FG G ++G IF+ Sbjct: 315 GLRGLSLLWLPHSDFTLYGLSIFAMFYGLDWIATVPPTVKLASATFGKERAGMIFGWIFA 374 Query: 362 VFQ 364 Q Sbjct: 375 AHQ 377 >gi|134096431|ref|YP_001101506.1| putative oxalate/formate antiporter [Herminiimonas arsenicoxydans] Length = 422 Score = 69.3 bits (168), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 62/201 (30%), Positives = 94/201 (46%), Gaps = 9/201 (4%) Query: 47 LFIRPLEADFGWSRTQIALASSIVSYTVMLISPIQGYLTDRFGARAVIVPCIPLFCVAVG 106 LF+ P+ A GWSR I +A +I T + PI+G+ D+FG R V++ L + Sbjct: 35 LFVDPIAAKHGWSRAAIQVAFTIFVLTETWLVPIEGWFVDKFGPRPVVIVGGVLCGLGWF 94 Query: 107 LMYFMPPVPWIYYAAWIALPVIGIGIFPLSYLRVVSSWFDKRLGLAIGIANAGIGIGGAV 166 + F + +Y AA I+ IG G + + WF R GLA G+ AG G G AV Sbjct: 95 INSFADSLALLYLAAVIS--GIGAGAVYGTCVGNALKWFPDRRGLAAGLTAAGFGAGSAV 152 Query: 167 IPLLIGAVIAHQGWRAGFVGLSALVALTLPLAYAFIREKPGTEPKKGRV-----QTVPGV 221 + I A+IA +G++ F+ + + L F+ P E KKG QT Sbjct: 153 TIIPISAMIATRGYQDAFLYFGIGQGIIVVLVALFLSRAP--EHKKGDAVANVQQTKREY 210 Query: 222 DFKTALRSREFKLLIGIFLLL 242 LR F L+ +F+++ Sbjct: 211 KPSEVLREPVFWLMYLMFVMV 231 >gi|134096395|ref|YP_001101470.1| putative transport protein [Herminiimonas arsenicoxydans] Length = 400 Score = 60.1 bits (144), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 61/240 (25%), Positives = 104/240 (43%), Gaps = 4/240 (1%) Query: 46 GLFIRPLEADFGWSRTQIALASSIVSYTVMLISPIQGYLTDRFGARAVIVPCIPLFCVAV 105 G+ ++P+EA+ SR+ + A S+ +S + G + DR G R ++ L + + Sbjct: 31 GVLMQPMEAELQTSRSVVVGAYSVALLISGCLSMLAGSIVDRIGGRLLMAAGSLLAALML 90 Query: 106 GLMYFMPPVPWIYYAAWIALPVIGIGIFPLSYLRVVSSWFDKRLGLAIGIANAGIGIGGA 165 L+ + V +Y A W + V S V++ FD AI + G Sbjct: 91 ALLSNVHSVLTLYLA-WAGIGVAMSATLYQSAFAVLTQVFDNGYRRAITMVTLFGGFAST 149 Query: 166 VIPLLIGAVIAHQGWRAGFVGLSAL-VALTLPLAYAFIREKPGTEPKKGRVQTVPGVDFK 224 V L A+ H GWR ++ +A+ + L PL + P + + R G+ Sbjct: 150 VFWPLTQALSDHVGWRNTWLIFAAVNLLLCFPLHWRLPAFSPAVDARTHRNTHKAGL--A 207 Query: 225 TALRSREFKLLIGIFLLLGVINTALIVHQMPMLMDAGVTPQRAAMVQATFGIFVIAGRLL 284 LR R F LL ++ +A+ +H M +L G++P AA + A G + GR+L Sbjct: 208 VVLRERRFYLLTSAVTFNALVFSAMSLHLMSILQSKGISPTHAAAIGAMIGPMQVLGRIL 267 >gi|134095635|ref|YP_001100710.1| putative oxalate/formate antiporter [Herminiimonas arsenicoxydans] Length = 437 Score = 55.5 bits (132), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 97/398 (24%), Positives = 159/398 (39%), Gaps = 36/398 (9%) Query: 47 LFIRPLEADFGWSRTQIALASSIVSYTVMLISPIQGYLTDRFGARAVIVPCIPLFCVAVG 106 LF L G + Q+ + +I+ +SP QGYL D+FG R +++ C + Sbjct: 37 LFTSELTKGLGATLPQVQVTFAILIVAQTFLSPFQGYLIDKFGPR-MLLSCGAILTALSW 95 Query: 107 LMYFMPPVPWIYYAAWIALPVIGIGIFPLSYLRVVSSWFDKRLGLAIGIANAGIGIGGAV 166 ++ W Y + L +G GI + + ++ WF R G A+G+ AG G G + Sbjct: 96 ILASGVTGIWGLYLTYGLLGGVGTGIIYVGVIGLMVQWFPDRRGFAVGMVAAGYGFGAIM 155 Query: 167 IPLLIGAVIAHQGWRA---------GFVGLSALVALTLPLAYAFIREKPGTEPKKGRVQT 217 I I G + G VGL+A + P A + + ++ Sbjct: 156 TTFAISMSIKSSGVASTLVMFGVIIGVVGLAAAQGMRRPRADEVAEHIKKVKLENTTRES 215 Query: 218 VPGVDFKTALRSREFKLLIGIFLLLGVINTA--LIVHQM-PMLMDAGVTPQRAAMV--QA 272 L+ F LL F+++ +++T+ +++ QM D GV AMV A Sbjct: 216 SYSYKPTEMLKKPVFWLL---FVMMTMMSTSGLMVISQMGAFAKDFGVAD---AMVFGMA 269 Query: 273 TFGIFVIAGRLLTGL-------LIDYISAVLVMCFLVLG-GTIACSLYAYGVTGNVVFLC 324 + + R+ GL + D I M F+ G +A +L+ V+F+ Sbjct: 270 ALPLALTIDRICNGLTRPFFGWVSDRIGRENTM-FIAFGLEGVAMTLWLMTTDNPVLFVI 328 Query: 325 AALLGMVL---GAEFDVLSYLLKRYFGMRAFGKLYGVIFSVFQFGAGAGAALLPLMRQAS 381 L G+V G F + +L FG + YG ++ G+ G L LM A+ Sbjct: 329 --LSGVVFFGWGEIFSLFPSILTDTFGTKHATTNYGFLYMAQGVGSVLGGPLAALMHDAT 386 Query: 382 GSYRSGLTTFAIATLTCALL-LIVLHLGGDKRLAKLRQ 418 GS+ T A+L IVL K LA+ + Sbjct: 387 GSWTPVFATVICMDFATAILAYIVLKPMRKKFLAQSEE 424 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.330 0.145 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 709,925 Number of extensions: 26482 Number of successful extensions: 142 Number of sequences better than 1.0e-08: 7 Number of HSP's gapped: 132 Number of HSP's successfully gapped: 7 Length of query: 423 Length of database: 1,000,347 Length adjustment: 84 Effective length of query: 339 Effective length of database: 723,567 Effective search space: 245289213 Effective search space used: 245289213 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.8 bits) S2: 130 (54.7 bits)