BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2308.p
         (628 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134095420|ref|YP_001100495.1| tRNA 4-thiouridine sulfurtransf...   102   7e-23

>gi|134095420|ref|YP_001100495.1| tRNA 4-thiouridine
           sulfurtransferase [Herminiimonas arsenicoxydans]
          Length = 417

 Score =  102 bits (253), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 67/217 (30%), Positives = 108/217 (49%), Gaps = 2/217 (0%)

Query: 245 VWFDNAATTHKPQAVIDRISEFYRRENSNIHRAAHELAARATDAYEGARERVRAFLNAPD 304
           ++ D +ATT     V D++  + R +  N    +H     A  A E ARE+V   +NA D
Sbjct: 20  IYMDYSATTPIDPRVADKMIPYLREQFGNPASRSHMYGWTAEKAVEDAREQVAKLVNA-D 78

Query: 305 VNEVIFVRGTTEAINLVAKSWGGKHVGAGDEIIVSHLEHHANIVPWQQLAAEKGAKLRVI 364
             E+I+  G TE  NL  K     +   G  II    EH A +   ++L   +G +   +
Sbjct: 79  PREIIWTSGATEGNNLALKGAAQFYKTKGKHIITVKTEHKAVLDTVRELE-RQGFEATYL 137

Query: 365 PVDDSGQVLLDEYAKLLNERTRIVAVTQVSNALGTVTPTKQIVELARLAGARTLVDGAQS 424
              D+G + +++ A+ +   T +V+V  V+N +G + P  +I EL R  G     D AQ+
Sbjct: 138 QPQDNGLITIEQLAEAIRPDTILVSVMLVNNEIGVIQPIDEIGELCRSKGIIFHCDAAQA 197

Query: 425 VSHMRTDVQALGADFFVFSGHKVFGPTGIGALWGRRE 461
              ++ D++    D   F+ HK +GP GIGAL+ RR+
Sbjct: 198 TGKVKIDLEKSKVDLMTFTAHKTYGPKGIGALYVRRK 234


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 1,207,489
Number of extensions: 51877
Number of successful extensions: 185
Number of sequences better than 1.0e-08: 1
Number of HSP's gapped: 183
Number of HSP's successfully gapped: 1
Length of query: 628
Length of database: 1,000,347
Length adjustment: 87
Effective length of query: 541
Effective length of database: 713,682
Effective search space: 386101962
Effective search space used: 386101962
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 132 (55.5 bits)