BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2305.p
         (308 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094505|ref|YP_001099580.1| serine acetyltransferase [Hermi...   142   3e-35

>gi|134094505|ref|YP_001099580.1| serine acetyltransferase
           [Herminiimonas arsenicoxydans]
          Length = 247

 Score =  142 bits (357), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 83/186 (44%), Positives = 108/186 (58%), Gaps = 12/186 (6%)

Query: 124 SQLDTDVLAAYQGDPAARSVDEVLLCYPGTLAMIHYRLAHRLYQLGLPLLARIIAELAHG 183
           S++  D+      DPAARSV EV+ CYPG  A++  R AH  +   L  L R  + +A  
Sbjct: 3   SRIKEDIANIIARDPAARSVWEVITCYPGLHAIVMQRWAHWFWVNDLKWLGRFTSHIARW 62

Query: 184 ATGIDIHPGAQIGTGFFIDHGTGVVIGETAIIGNNVRIYQAVTLGAKRFPTDAEGKLEKG 243
            TGI+IHPGA+IG   FIDHG GVVIGETA IG++  IYQ VTLG           L KG
Sbjct: 63  LTGIEIHPGAKIGRRVFIDHGFGVVIGETAEIGDDCTIYQGVTLGGT--------SLSKG 114

Query: 244 RARHPIVEDDVVIYAGATILGRIRLGRGAIIGGNVWLTHDVPAGA----NISQAASREDT 299
             RHP + + V+I AGA +LG   +G GA +G N  +  +VPAGA    N ++   ++DT
Sbjct: 115 AKRHPTLGNGVIIGAGAQVLGAFTVGEGAKVGSNAVVVKEVPAGATAVGNPARIILKDDT 174

Query: 300 LSLANA 305
              A A
Sbjct: 175 RDQAAA 180


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.138    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 555,207
Number of extensions: 22223
Number of successful extensions: 70
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 69
Number of HSP's successfully gapped: 2
Length of query: 308
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 227
Effective length of database: 733,452
Effective search space: 166493604
Effective search space used: 166493604
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 128 (53.9 bits)