BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2304.p
         (168 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094180|ref|YP_001099255.1| putative rhodanese-like protein...   100   3e-23
gi|134094425|ref|YP_001099500.1| putative rhodanese-like protein...    66   1e-12

>gi|134094180|ref|YP_001099255.1| putative rhodanese-like protein
           [Herminiimonas arsenicoxydans]
          Length = 154

 Score =  100 bits (250), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 61/146 (41%), Positives = 80/146 (54%), Gaps = 6/146 (4%)

Query: 26  LAQIRAQAMADGLPYAGGIGPQQAWELVAA-GKVVLVDVRTAEERKFVGHVP----HSLH 80
           LA  R +A A  LPYAG + PQ+A+ L+     V LVDVRT  ER ++G         L 
Sbjct: 8   LASARERAHAHALPYAGALTPQEAYALLQNDANVKLVDVRTNAERDWIGRPAIAPEQHLA 67

Query: 81  VAWATGTSLSRNPRFVRELESKLGGKDVPALLLCRSGKRSVAAAEAATKAGLTCIFNVLE 140
           V W      ++N  F+ +L S++ GKD   L LCR   RS  AA+ AT+ G    +++LE
Sbjct: 68  VQWNLYPGGAQNADFLSQL-SQVAGKDSVLLFLCRGAVRSKHAAKVATENGYAHSYDILE 126

Query: 141 GFEGELDASQQRGKADGWRFHGLPWV 166
           GFEGE DA   R   +GW   GLPW 
Sbjct: 127 GFEGEKDADGHRKNVNGWCHAGLPWT 152


>gi|134094425|ref|YP_001099500.1| putative rhodanese-like protein,
           sulfurtransferase [Herminiimonas arsenicoxydans]
          Length = 194

 Score = 65.9 bits (159), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 43/129 (33%), Positives = 57/129 (44%), Gaps = 20/129 (15%)

Query: 57  KVVLVDVRTAEERKFVG----------HVPHSLHVAWATGTS---LSRN----PRFVREL 99
           K   VDVRT  E  +VG          +V H     W    +   L  N    P   R +
Sbjct: 52  KAYFVDVRTRGEVSYVGMATPVDANIPYVEHPYDAPWDDKNARFKLDVNSDFAPELARRM 111

Query: 100 ESKLGGKDVPALLLCRSGKRSVAAAEAATKAGLTCIFNVLEGFEGELDASQQRG---KAD 156
           E    GKD   +L+CRSG RS  AA      G T ++ V++GFEG++     R      +
Sbjct: 112 EQAGMGKDDTVILICRSGDRSARAANLLADLGYTKVYTVVDGFEGDVAKDGPRAGERAVN 171

Query: 157 GWRFHGLPW 165
           GW+  GLPW
Sbjct: 172 GWKNSGLPW 180


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.133    0.402 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 324,331
Number of extensions: 11758
Number of successful extensions: 46
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 43
Number of HSP's successfully gapped: 2
Length of query: 168
Length of database: 1,000,347
Length adjustment: 75
Effective length of query: 93
Effective length of database: 753,222
Effective search space: 70049646
Effective search space used: 70049646
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 125 (52.8 bits)