BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2302.p (880 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [... 379 e-106 gi|134093880|ref|YP_001098955.1| putative signal peptide [Hermin... 376 e-105 gi|134094165|ref|YP_001099240.1| putative sensor/regulator prote... 370 e-103 gi|134094323|ref|YP_001099398.1| putative sensory protein [Hermi... 362 e-101 gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein... 328 8e-91 >gi|134094556|ref|YP_001099631.1| hypothetical protein HEAR1331 [Herminiimonas arsenicoxydans] Length = 859 Score = 379 bits (972), Expect = e-106, Method: Compositional matrix adjust. Identities = 218/562 (38%), Positives = 325/562 (57%), Gaps = 14/562 (2%) Query: 319 QQSEASLR-IAAAAFHSSEAIWVMDADRKVLEANDAFTELTGYRQDELDEHGMPLCRRDE 377 +QSE +R ++ A SS AI + D + + AN F+ TGY ++ + + + Sbjct: 300 KQSEVFMRKLSQAVEQSSNAIIITDLNGTIEYANTTFSTNTGYALHDIIGKKPNMHKSGK 359 Query: 378 LHDDFRAELWTRVQYEGKWQGELLVLHKNGQTFWAMLTLTAVADPHGKVSHYVGTQVDIS 437 A++W + WQGE + NG+ ++ ++ V + G+++HY+ + DI+ Sbjct: 360 TSRATYADMWAHLGRGESWQGEFINRRHNGEERIDLVRVSPVREADGRITHYLAIEEDIT 419 Query: 438 SQKRLQEETRQLAFYDPLTGLPNRRLLLEKIEAAGASESTRNEVAGALFFVDIDNFKDLN 497 +QK Q LA +D LTGLPNR LL E+ + A + ++ A+ F+D+D+FK++N Sbjct: 420 NQKNAQARIESLAHFDVLTGLPNRALLDERAQRA-LRLAEEDQATLAVMFLDLDHFKNIN 478 Query: 498 DALGHSLGDQLLSQIAARLLKLTGSSGLVARLGGDEFVVLLPSALAVQDQKQEQDVASQF 557 D LGH+LGD LL ++A RL + ++RLGGDEFV+LLP A ++ A + Sbjct: 479 DTLGHNLGDTLLVELAQRLRAVLRRDDTLSRLGGDEFVLLLPGA--------NRESAKKI 530 Query: 558 AQRIIDVMQERFDLSGVSHFATCSVGVALMRAHGANVEDLLRQGDLAMYAAKQKGRNTFC 617 AQ ++ + E + + S+G+A+ A G + E L + D+AMY AKQ+GRN + Sbjct: 531 AQELMRAINEPYRIGSHELNVMASIGIAVYPADGMDFETLCKNADVAMYRAKQEGRNAYR 590 Query: 618 LFDQEME-YALHFRTGLESDLRRAIDSGEFELHYQPQRDQ-EGTLIGVEALARWNSPFRG 675 F QEM+ Y+ + L + LR+AI + +HYQPQ G +IG EAL RW+ P G Sbjct: 591 SFTQEMQAYSTRYLQVLNA-LRQAIAQEQLHVHYQPQISLISGDVIGAEALLRWHHPELG 649 Query: 676 SVSPAIFIPVAEASGLILPLGQWVFQQACRQSVRWNRQGHKTPVVIAVNVSAVQLHQPDF 735 ++SPA FIP+AE SGLIL +G+WV + A Q+ +W++ G ++IAVN+SAVQ Sbjct: 650 NISPAEFIPIAEESGLILQIGEWVLRVAVAQAKKWHQLGLDK-LIIAVNLSAVQFRHAGL 708 Query: 736 VQHILATLQATGADPSHLKLELTESAMVEDVQATIEKMLELKRHGLALSLDDFGTGYSSL 795 ++ L+ P +L+LELTE + D Q I M L G+ +S+DDFGTGYSSL Sbjct: 709 PNLVMQILKEEDFPPQYLELELTEGVAMHDPQGAIAMMNSLHERGVRMSIDDFGTGYSSL 768 Query: 796 SLLKRLPIDQIKIDQSFVRELLVAPSDVAIAKTIIALANALGLEVLAEGVETREQQQFLA 855 S LK+ ++KIDQSFVR++ D AI II +A LGL+ +AEGVET EQQ FL Sbjct: 769 SYLKQFKAYKLKIDQSFVRDISTDAEDKAIVSAIIGMAKNLGLQTIAEGVETAEQQAFLR 828 Query: 856 LLGCTRYQGYLFGRPLPAEQFD 877 GC QGY + +PLPA F+ Sbjct: 829 EEGCHEAQGYHYSKPLPAADFE 850 >gi|134093880|ref|YP_001098955.1| putative signal peptide [Herminiimonas arsenicoxydans] Length = 944 Score = 376 bits (965), Expect = e-105, Method: Compositional matrix adjust. Identities = 248/681 (36%), Positives = 364/681 (53%), Gaps = 56/681 (8%) Query: 237 LFFVSGKAQPH-ETLAAIDRALLQWQADPDSIYFQIL-RKWGRGNTAVPTY--------V 286 +F +A+P + L+A+ L Q DP F + + W + P + + Sbjct: 262 VFHKGSRAEPTAQPLSALPMWLFYNQPDPYHHVFSVAGQTWHMEVSTPPAWFAMERSNAL 321 Query: 287 WWLLGGALALLVVASLMAIYL-------RR---EVARRTARL--------------QQSE 322 W L G L + AIYL RR +V RTA+L +++E Sbjct: 322 WAFLAG----LFFTAAAAIYLQAVLDRSRRIQLQVDERTAQLRIANEDLSADIAARKRAE 377 Query: 323 ASLRIAAAAFHSS-EAIWVMDAD---RKVLEANDAFTELTGYRQDELDEHGMPLCRR--D 376 +L++ A +S +I ++ A+ + N AF +TGY +E G+ LC Sbjct: 378 YALQLRERAIEASANSIIIISAEAPHYAIEYVNPAFERITGYSAEE--AIGVNLCFLWGT 435 Query: 377 ELHDDFRAELWTRVQYEGKWQGELLVLHKNGQTFWAMLTLTAVADPHGKVSHYVGTQVDI 436 ++ E+ E + L K+G FW+ L + V D G VSH++ Q DI Sbjct: 436 DVDQPGIEEIRATASAEREGHAVLRNYRKDGTLFWSDLYIAPVKDDTGTVSHFIVVQYDI 495 Query: 437 SSQKRLQEETRQLAFYDPLTGLPNRRLLLEKIEAAGASESTRNEVAGALFFVDIDNFKDL 496 ++ KR + E D LTGL NR L+ +++ A S + R + FVD+D FK + Sbjct: 496 TATKRYESELEFQTNRDALTGLANRSLMRDRLGQA-VSYAHRYGHPIWILFVDLDRFKFV 554 Query: 497 NDALGHSLGDQLLSQIAARLLKLTGSSGLVARLGGDEFVVLLPSALAVQDQKQEQDVASQ 556 ND LGH GD LL ++ARL + VAR+GGDEFV++LP ++ + +++ Sbjct: 555 NDTLGHQAGDILLKAVSARLQAAVRDTDTVARMGGDEFVLILP-------ERTDAGLSTG 607 Query: 557 FAQRIIDVMQERFDLSGVSHFATCSVGVALMRAHGANVEDLLRQGDLAMYAAKQKGRNTF 616 QRI++ + + + G F + S+GVA+ A G E+L++ D+AMY AK+ GRN F Sbjct: 608 IMQRIMESIAQPLTIEGHEFFISGSIGVAVYPADGETPEELIKHADIAMYRAKETGRNNF 667 Query: 617 CLFDQEMEYALHFRTGLESDLRRAIDSGEFELHYQPQRD-QEGTLIGVEALARWNSPFRG 675 + M R +E DLR A++ EF LHYQPQ D + G ++GVEAL RW P G Sbjct: 668 QFYTPAMNERALERLHIEGDLRNALEREEFTLHYQPQVDLRSGQIVGVEALIRWQHPELG 727 Query: 676 SVSPAIFIPVAEASGLILPLGQWVFQQACRQSVRWNRQGHKTPVVIAVNVSAVQLHQPDF 735 V P FI +AE +GLI+P+G WV + AC Q+ W G + ++VN+SA Q Q D Sbjct: 728 MVPPVRFIGLAEENGLIVPIGAWVIRTACLQNKVWQESGFGH-LRMSVNLSARQFAQEDL 786 Query: 736 VQHILATLQATGADPSHLKLELTESAMVEDVQATIEKMLELKRHGLALSLDDFGTGYSSL 795 V I +L+ P +L++ELTES ++ DV I + ELK G+ LS+DDFGTGYSSL Sbjct: 787 VDSIAVSLREANLAPEYLEIELTESLVMADVDRAIGILRELKALGVQLSIDDFGTGYSSL 846 Query: 796 SLLKRLPIDQIKIDQSFVRELLVAPSDVAIAKTIIALANALGLEVLAEGVETREQQQFLA 855 S LKR PID +KID+SFV ++ + P D AI ++I+LA++L L+V+AEGVET EQ +L Sbjct: 847 SYLKRFPIDVLKIDRSFVNDITIDPDDAAIVASVISLAHSLRLDVIAEGVETEEQLTYLR 906 Query: 856 LLGCTRYQGYLFGRPLPAEQF 876 C + QGY F RP+ AE F Sbjct: 907 EHNCDQIQGYFFSRPVTAEAF 927 >gi|134094165|ref|YP_001099240.1| putative sensor/regulator protein [Herminiimonas arsenicoxydans] Length = 818 Score = 370 bits (951), Expect = e-103, Method: Compositional matrix adjust. Identities = 215/530 (40%), Positives = 311/530 (58%), Gaps = 17/530 (3%) Query: 347 VLEANDAFTELTGYRQDELDEHGMPLCRRDELHDDFRAELWT-RVQYEGKWQGELLV--L 403 ++ N AF +TGY +E C+ + D + EL R + +L+ Sbjct: 285 LIYVNGAFETITGYSSEEAIGRN---CKFLQGMDTDQPELGKLRAAIREQRPASVLLRNY 341 Query: 404 HKNGQTFWAMLTLTAVADPHG-KVSHYVGTQVDISSQKRLQEETRQLAFYDPLTGLPNRR 462 HK+G F L + V+D G V H+VG D++ KR QE+ A YD LTGL NR Sbjct: 342 HKDGSMFLNELYIAPVSDTSGGAVGHFVGVLYDVTQIKRYQEDLEHQANYDTLTGLANRN 401 Query: 463 LLLEKIEAAGASESTRNEVAGALFFVDIDNFKDLNDALGHSLGDQLLSQIAARLLKLTGS 522 LL E+ + A ++ R++ +L F+D+DNFK +ND++GH GD+L++ + +RL Sbjct: 402 LLNERTQQA-LLQARRHDHFLSLVFIDLDNFKLVNDSMGHGAGDELIANVGSRLQTCVRD 460 Query: 523 SGLVARLGGDEFVVLLPSALAVQDQKQEQDVASQFAQRIIDVMQERFDLSGVSHFATCSV 582 VAR+GGDEFV+LL + + D + QRI + + + G TCS+ Sbjct: 461 GDTVARIGGDEFVLLLTN-------QSVSDSNAGVMQRIQAELIKPMWIRGQEIVVTCSM 513 Query: 583 GVALMRAHGANVEDLLRQGDLAMYAAKQKGRNTFCLFDQEMEYALHFRTGLESDLRRAID 642 GVA G + E LL D AMY AK GRN F + +EM R LESDL A+ Sbjct: 514 GVARFPEDGEDSESLLANADTAMYRAKSSGRNNFQFYTKEMNATSGERLSLESDLWHALK 573 Query: 643 SGEFELHYQPQRD-QEGTLIGVEALARWNSPFRGSVSPAIFIPVAEASGLILPLGQWVFQ 701 + E L YQPQ D ++GT+IG+EAL RW P RG ++P FIP+AE +GLI+P+G WV + Sbjct: 574 NDELFLVYQPQIDLRDGTVIGMEALIRWQHPKRGLIAPMDFIPMAECNGLIIPIGIWVLE 633 Query: 702 QACRQSVRWNRQGHKTPVVIAVNVSAVQLHQPDFVQHILATLQATGADPSHLKLELTESA 761 ACR +++ ++G P+ +A+N+SA QL +FV+ + + ++A G DP +L+LE+TES Sbjct: 634 TACRHNLQLQKEG-LPPIRVAINLSARQLSDRNFVESVQSVIEAIGLDPHYLELEVTESM 692 Query: 762 MVEDVQATIEKMLELKRHGLALSLDDFGTGYSSLSLLKRLPIDQIKIDQSFVRELLVAPS 821 ++ +V+ + + +L + G+ LSLDDFGTG+SSL+ LKR PID++KIDQSF+ P Sbjct: 693 VMHNVEDVVVTLNDLNKMGIQLSLDDFGTGFSSLAYLKRFPIDRLKIDQSFIFNCDSDPG 752 Query: 822 DVAIAKTIIALANALGLEVLAEGVETREQQQFLALLGCTRYQGYLFGRPL 871 D IA+TIIALA+ L ++V+AEGVE E FL GC QGY RPL Sbjct: 753 DAIIAQTIIALAHGLKIKVIAEGVEKSEHLSFLKKNGCDEGQGYFISRPL 802 >gi|134094323|ref|YP_001099398.1| putative sensory protein [Herminiimonas arsenicoxydans] Length = 710 Score = 362 bits (928), Expect = e-101, Method: Compositional matrix adjust. Identities = 208/477 (43%), Positives = 282/477 (59%), Gaps = 11/477 (2%) Query: 402 VLHKNGQTFWAMLTLTAVADPHGKVSHYVGTQVDISSQKRLQEETRQLAFYDPLTGLPNR 461 + NG W AV G++ + GT I+ +K + E + A +D LTGLPNR Sbjct: 239 IYKSNGDIIWISENARAVHTSTGELLFFEGTVEAITERKLHEAEIQFQATHDALTGLPNR 298 Query: 462 RLLLEKIEAAGASESTRNEVAGALFFVDIDNFKDLNDALGHSLGDQLLSQIAARLLKLTG 521 LL ++++ A S R A+ F+D+D FK +ND+LGH +GD+LL A RL Sbjct: 299 TLLYDRMQQA-VLHSARYGNLTAIAFLDLDQFKFINDSLGHQVGDELLKITAQRLTSCLR 357 Query: 522 SSGLVARLGGDEFVVLLPSALAVQDQKQEQDVASQFAQRIIDVMQERFDLSGVSHFATCS 581 S VAR GGDEFV+LL S Q E+ + + QR++ + + + +G+ TCS Sbjct: 358 ESDTVARQGGDEFVLLLTS------QPSEESI-THTMQRVLHEVAQPWMANGLEFRITCS 410 Query: 582 VGVALMRAHGANVEDLLRQGDLAMYAAKQKGRNTFCLFDQEMEYALHFRTGLESDLRRAI 641 VGV L G + E LL+ D AMY AK+ GRN F F EM R L + LR+AI Sbjct: 411 VGVTLCPDDGRDAETLLKNADSAMYKAKELGRNNFQYFATEMNDTATDRLALLNRLRQAI 470 Query: 642 DSGEFELHYQPQRD-QEGTLIGVEALARWNSPFRGSVSPAIFIPVAEASGLILPLGQWVF 700 + EF LHYQP+ + G +IG EAL RWNS G VSP FIP+AE +GLI+P+G WV Sbjct: 471 PNHEFVLHYQPKINLANGDIIGAEALIRWNSA-EGMVSPGSFIPLAEETGLIIPIGVWVL 529 Query: 701 QQACRQSVRWNRQGHKTPVVIAVNVSAVQLHQPDFVQHILATLQATGADPSHLKLELTES 760 + ACRQ+ W G+ P+ I+VN+S+ QL + D V+ + L TG + +L+LE+TES Sbjct: 530 ETACRQNRAWQLAGY-APITISVNLSSRQLARGDIVEQVEQVLAETGLEAQYLELEITES 588 Query: 761 AMVEDVQATIEKMLELKRHGLALSLDDFGTGYSSLSLLKRLPIDQIKIDQSFVRELLVAP 820 M DV+ + + L+ G+ +SLDDFGTGYSSLS LKR P+D +KIDQSFVR+L + Sbjct: 589 VMASDVEKSFALLTRLRLLGVKISLDDFGTGYSSLSYLKRFPVDTLKIDQSFVRDLATSQ 648 Query: 821 SDVAIAKTIIALANALGLEVLAEGVETREQQQFLALLGCTRYQGYLFGRPLPAEQFD 877 AI K II+L + L L VLAEG+ET EQ QFL C QGYL RP+ + F+ Sbjct: 649 DSAAIVKAIISLGHNLNLTVLAEGIETEEQFQFLLKSACNEGQGYLMSRPVSHQHFE 705 >gi|134093904|ref|YP_001098979.1| GGDEF domain-containing protein [Herminiimonas arsenicoxydans] Length = 599 Score = 328 bits (840), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 189/442 (42%), Positives = 273/442 (61%), Gaps = 15/442 (3%) Query: 443 QEETRQL--AFYDPLTGLPNRRLLLEKIEAAGASESTRNEVAGALFFVDIDNFKDLNDAL 500 QE++R L A +D LTG+PNRRL E + A + + R+ ALFF+D+D FK +ND L Sbjct: 159 QEKSRALLQASHDYLTGVPNRRLFYE-MAATELARAKRSRKLYALFFLDLDKFKLINDTL 217 Query: 501 GHSLGDQLLSQIAARLLKLTGSSGLVARLGGDEFVVLLPSALAVQDQKQEQDVASQFAQR 560 GH++GD LL +A RL + L+ARLGGDEFV+L V + E D+A + A + Sbjct: 218 GHAVGDLLLQGVARRLRESLREYDLLARLGGDEFVIL------VSEMASESDIA-RVAAK 270 Query: 561 IIDVMQERF-DLSGVSHFATCSVGVALMRAHGANVEDLLRQGDLAMYAAKQKGRNTFCLF 619 ++DV+++ F DL G + S+G+AL G +VE LL DLAMY+AK G T+ F Sbjct: 271 LVDVVRDPFLDLGGNDIDVSPSIGIALYPRDGQDVETLLMHADLAMYSAKSAGAATYRFF 330 Query: 620 DQEMEYALHFRTGLESDLRRAIDSGEFELHYQPQRD-QEGTLIGVEALARWNSPFRGSVS 678 D + + T L S +RAI EF LHYQP+ + Q +++G+EAL RWN P G + Sbjct: 331 DTSLNASSARETELLSRFKRAIKDDEFCLHYQPRVELQNFSVLGLEALIRWNHPEHGLIY 390 Query: 679 PAIFIPVAEASGLILPLGQWVFQQACRQSVRWNRQGHKTPVV-IAVNVSAVQLHQPDFVQ 737 P FI +AE + LI+PLG WV ACRQ W QG P+V +A+NVS+ QL ++ Sbjct: 391 PNDFISLAENNDLIVPLGNWVVDAACRQLAVWRGQG--LPIVPVAINVSSRQLKDDTLLE 448 Query: 738 HILATLQATGADPSHLKLELTESAMVEDVQATIEKMLELKRHGLALSLDDFGTGYSSLSL 797 ++ TL P L++E+TES +ED A + + +L+++G+ ++LDD+GTG+S L Sbjct: 449 TVMTTLAKYQIAPEMLEIEVTESCFIEDFDAASQVLEQLQKNGIKIALDDYGTGFSGLKN 508 Query: 798 LKRLPIDQIKIDQSFVRELLVAPSDVAIAKTIIALANALGLEVLAEGVETREQQQFLALL 857 LK LPI IKID+SF+R++ SD I + I+LA+ LGL+V+AEGVE++EQ L Sbjct: 509 LKILPIYAIKIDRSFIRDIRNDNSDAVIVASTISLAHNLGLQVVAEGVESKEQLVHLKTA 568 Query: 858 GCTRYQGYLFGRPLPAEQFDAV 879 GC + QG+ F RP+ A + D + Sbjct: 569 GCDQVQGFYFQRPVAATEIDTL 590 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.321 0.135 0.399 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,612,204 Number of extensions: 65297 Number of successful extensions: 304 Number of sequences better than 1.0e-08: 33 Number of HSP's gapped: 223 Number of HSP's successfully gapped: 33 Length of query: 880 Length of database: 1,000,347 Length adjustment: 90 Effective length of query: 790 Effective length of database: 703,797 Effective search space: 555999630 Effective search space used: 555999630 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)