BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2298.p
         (290 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093804|ref|YP_001098879.1| copper resistance D transmembra...    84   6e-18
gi|134094764|ref|YP_001099839.1| copper resistance protein D [He...    69   3e-13

>gi|134093804|ref|YP_001098879.1| copper resistance D transmembrane
           protein like [Herminiimonas arsenicoxydans]
          Length = 311

 Score = 84.3 bits (207), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 77/238 (32%), Positives = 122/238 (51%), Gaps = 21/238 (8%)

Query: 68  GEGWRDALRLDMLADVANGTSIGTAWWCQLA-----ALFVLMGCWRMSGLASLLGCAAGS 122
           G    D L   ++  V  GT +G AW  ++A     AL +L+G W+      L   A  S
Sbjct: 73  GSESYDELTAHIIGMVITGTDMGIAWLVRMAGLLICALIILVGKWQNKRFVPL---AIIS 129

Query: 123 GILLVSLALTGHAVMDDGCKRWAHQASDLLHVGSVGAWMGALPVVLLVLSRQCLSVYPAL 182
            +   + A +GHA M +G  +  H  SD+ H+ + GAW+GAL  ++ + +    S   AL
Sbjct: 130 AVSFATFAWSGHAAMHEGIVKAGHLMSDITHLLAAGAWVGALFSLVTLATFNPHSTPNAL 189

Query: 183 AKQILRR----FSNVGHAVVALVLLSGLCNTWLILG-GLPLDWRFPYQVLLALKILVAVM 237
             ++L +    F+ +G  +V  ++++GL N  LI G  L +     Y +LL +K+ + + 
Sbjct: 190 --EVLSKTSSGFAKLGTVIVGALVVTGLANYLLIAGPSLNVLTSTQYGLLLVIKLGLFMG 247

Query: 238 MVLIAIFNRYVLVP----AMRHDRSALD-RLRRLSLL-EIGLGWLALLLLAWLGMLQP 289
           M+ IA  NRY+L P    A+R D      RL R+SL+ E  L  L +  +AWLG+L P
Sbjct: 248 MLAIAAANRYLLSPKVEIAIRLDNGVEACRLLRVSLITETSLALLVVACVAWLGVLSP 305


>gi|134094764|ref|YP_001099839.1| copper resistance protein D
           [Herminiimonas arsenicoxydans]
          Length = 306

 Score = 68.6 bits (166), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/177 (33%), Positives = 97/177 (54%), Gaps = 11/177 (6%)

Query: 123 GILLVSLALTGHAVMDDGCKRWAHQASDLLHVGSVGAWMGALPVVLLVL--SRQCLSVYP 180
           GI L +LA  GH VM++  K + H  +D++H+ + GAW+GAL   LL+L  + +      
Sbjct: 130 GIALATLAWGGHGVMNEDVKGFVHLGADIVHLIAAGAWIGALASFLLLLSWTPKGGRAEV 189

Query: 181 ALAKQILRRFSNVGHAVVALVLLSGLCNTWLILGGLPLDWRF--PYQVLLALKILVAVMM 238
               ++L  F+ +G  +V+ +L++G  N +L++ GL     F   Y +LL +K+++ + M
Sbjct: 190 EQLGRMLNGFAIMGSVIVSALLVTGTIN-YLMISGLNFGSIFATTYGILLTIKLVLFLTM 248

Query: 239 VLIAIFNRYVLVPAMR------HDRSALDRLRRLSLLEIGLGWLALLLLAWLGMLQP 289
           + +A  NRY L P +       +   A+  LR   +LE G   L L L+A LGML P
Sbjct: 249 LALAAANRYRLTPKLEASIASDNHGPAIAALRGSLVLESGCALLILFLIACLGMLNP 305


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.330    0.142    0.462 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 435,324
Number of extensions: 16242
Number of successful extensions: 84
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 82
Number of HSP's successfully gapped: 2
Length of query: 290
Length of database: 1,000,347
Length adjustment: 81
Effective length of query: 209
Effective length of database: 733,452
Effective search space: 153291468
Effective search space used: 153291468
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 128 (53.9 bits)