BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2268.p (299 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134095306|ref|YP_001100381.1| LysR family transcriptional reg... 84 9e-18 gi|134093581|ref|YP_001098656.1| LysR family transcriptional reg... 84 1e-17 gi|134093979|ref|YP_001099054.1| LysR family transcriptional reg... 79 3e-16 gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-... 73 2e-14 gi|134096369|ref|YP_001101444.1| putative HTH-type transcription... 71 7e-14 >gi|134095306|ref|YP_001100381.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 294 Score = 84.0 bits (206), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 72/300 (24%), Positives = 128/300 (42%), Gaps = 15/300 (5%) Query: 1 MKIDILGVQAFVAIADQGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALT 60 M+ D+ + F+ + GS A H++ + + R+R +E+ LG+ L+ R R + T Sbjct: 1 MRFDLTDLTLFLHSVETGSITAGAERSHLSLASASARIRGMEEMLGIPLLIRGQRGVEAT 60 Query: 61 AIGQDFLPQARRLLAELAEALVEIRETGIARRGDVSIACVPTVGVQYLPRIMQAYSARYP 120 +G+ + AR L + E+ E +G V I ++LP + + A +P Sbjct: 61 PVGKALVHHARIALRQQERMRGELSEYAQGLKGHVRIMSNTVSLTEFLPEALSNFLATHP 120 Query: 121 HNRIKILDHASSAVAEAVLRREVEFGINIAREHHPELVSMALTEDRYVLICHKDHPLARR 180 + I + + S + A+ ++ GI + +DR L+ +DHPL+ R Sbjct: 121 NVNIDLEERLSFEIVSALTEGTIDIGILSDSVDFSGFETFPFHDDRLTLVVARDHPLSVR 180 Query: 181 RRIAWMQLQSYPLIFAGEVSGNRALLDPALKANG------FVLRSFYEVQRSSTAVGLVA 234 I + + Y I E S + L G LRSF V R ++ Sbjct: 181 SSIHFAETLDYDFIGLQEGSALQEYLSEQAAKMGRRFKYRVRLRSFDAVCR------MIE 234 Query: 235 QGVGVGVAVVPKLAVQE-GAYPNVRMIELVDPVVSRTLVLITRKAAHLSPAAQALYDMIR 293 + VG+G VVP+ A ++ + ++D SR L++ + + L AQ L + IR Sbjct: 235 RNVGIG--VVPEAAANRLKKSMDIHTVSILDSWSSRKLIICAQSYSDLPIHAQQLIEQIR 292 >gi|134093581|ref|YP_001098656.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 315 Score = 83.6 bits (205), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 78/282 (27%), Positives = 137/282 (48%), Gaps = 16/282 (5%) Query: 8 VQAFVAIADQGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALTAIGQDFL 67 ++ VA+A + F AA A HV Q +++ ++KLED LGVTL ER I++T +G + Sbjct: 6 LKYIVAVAREKHFGHAAEACHVAQPTLSVAIKKLEDELGVTLFERGGSEISMTPLGVQIV 65 Query: 68 PQARRLLAELAEALVEI-RETGIARRGDVSIACVPTVGVQYLPRIMQAYSARYPHNRIKI 126 QA R+L + A A+ EI ++ G + + T+ LP +++A R P + + Sbjct: 66 AQAERVLEQTA-AIKEIAKQNKDPLVGPFRLGIIYTIAPYLLPPLVKAMIERVPQMPLVL 124 Query: 127 LDHASSAVAEAVLRREVEFGINIAREHHPELVSMALTEDRYVLICHKDHPLARRRRIAWM 186 ++ + + E + + E++ I L+ + ++ +V+ K HP A R + Sbjct: 125 QENFTVKLLEQLRQGEIDAAIVALPIPDQGLLVQPVYDEPFVVAVPKHHPWAERSSVTTD 184 Query: 187 QLQSYPLIFAGEVSGNR-ALLDPALKANGF------VLRSFYEVQRSSTAVGLVAQGVGV 239 L+S ++ G R +L+ + + F + R+F E T +VA G+G+ Sbjct: 185 NLKSETMLLLGNGHCFRDQVLEVCPEMSRFSTSGDGIARTF-EGSSLETIRHMVASGIGI 243 Query: 240 GV---AVVPKLAVQEGAYPNVRMIELVDPVVSRTLVLITRKA 278 V A VP + +G +R I V P SR +VL+ RK+ Sbjct: 244 TVLPQASVPDMHTTDGM---LRYIPFVQPGPSRRVVLVWRKS 282 >gi|134093979|ref|YP_001099054.1| LysR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 297 Score = 78.6 bits (192), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 81/309 (26%), Positives = 144/309 (46%), Gaps = 26/309 (8%) Query: 1 MKIDILGVQAFVAIADQGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALT 60 M I++ ++ FV +A++ F AA LH+TQ ++ ++ LE LGV L RT+RS+ALT Sbjct: 1 MNIELRQLRYFVTVAEEMHFGRAAIRLHMTQPPLSQAIQSLEAMLGVQLFRRTSRSVALT 60 Query: 61 AIGQDFLPQARRLLAELAEALVEIRETGIARRGDVSIACVPTVGVQYLPRIMQAYSARYP 120 G LP+A+R+L + A +R G +S+A V T LP ++ + YP Sbjct: 61 PAGSALLPEAQRILQQTAALPDLMRRVTSGASGRLSLAFVSTADYSVLPPFLREFRESYP 120 Query: 121 HNRIKILDHASSAVAEAVLRREVEFGINIAREHHPELVSMALTEDRYVLICHKDHPLAR- 179 I + + + + +++ ++ G+ I P L A + Y+ + + LA Sbjct: 121 GVEIDLREATTDVQLDDLMQGRIDVGLLI-----PPLPDKAKLQLDYLPVLSEPLILAAP 175 Query: 180 --------RRRIAWMQLQSYPL-IFAGEVSG--NRALLDPALKANGFVLRSFYEVQRSST 228 ++ +A L PL IF ++ + A+L + G E + T Sbjct: 176 KGLKALKGKQSVALQSLAELPLIIFPRRIAPAFHDAILS-CYRDAGLTPHIGQEAIQMQT 234 Query: 229 AVGLVAQGVGVGVAVVPKLAVQEGAYPNVRMIELVD--PVVSRTLVLITRKAAHLSPAAQ 286 +GLV+ G+G+A+VP+ +V P V L + P+V L + + SP + Sbjct: 235 IIGLVS--AGMGIALVPQ-SVSNLKRPGVDYKPLANKTPLVETGLAW---RRDNASPVLK 288 Query: 287 ALYDMIREQ 295 A +++R+ Sbjct: 289 AFLELLRKN 297 >gi|134095567|ref|YP_001100642.1| transcriptional regulator CysB-like protein [Herminiimonas arsenicoxydans] Length = 313 Score = 72.8 bits (177), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/280 (25%), Positives = 119/280 (42%), Gaps = 31/280 (11%) Query: 23 AAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSI-ALTAIGQDFLPQARRLLAELAEAL 81 AA AL +Q V+ + +LE+ LGV + R + I LT G+ L ++ E+ E L Sbjct: 22 AAKALFTSQPGVSKAIIELEEELGVDIFSRHGKRIRGLTEPGRAVLKSVEAIMLEI-EGL 80 Query: 82 VEI-RETGIARRGDVSIACVPTVGVQYLPRIMQAYSARYPHNRIKILDHASSAVAEAVLR 140 I E G +IA T LP+++QA++ ++P R+ +L +AE VL Sbjct: 81 KRIGNEFAAHDSGSFTIATTHTQARYSLPKVVQAFTQKFPKVRLSLLQGNPKQIAEMVLM 140 Query: 141 REVEFGINI-AREHHPELVSMALTEDRYVLICHKDHPLARRRRIAWMQLQSYPLIFAGEV 199 + + I A + L+S+ + + ++ DHPL + + I +L +YP+I Sbjct: 141 DQADLAIATEAIANMDGLISLPCYQWEHQIVLPLDHPLLKSKSITLEELAAYPIITYDSA 200 Query: 200 SGNRALLDPALKANGFVLRSFYEVQRSSTAVGLVAQGVGVGVAV---------------- 243 R +D A E + V G+G+G+ Sbjct: 201 FAGRNKIDHAFNLRNLKPDILLEAIDADVIKTYVELGMGIGIIAGMAFDTERDKNLRAIP 260 Query: 244 --------VPKLAVQEGAYPN---VRMIELVDPVVSRTLV 272 V ++A+++GAY IEL+ P ++R LV Sbjct: 261 AGHLFGTNVSRVALKQGAYLRSYVFTFIELLTPTLNRKLV 300 >gi|134096369|ref|YP_001101444.1| putative HTH-type transcriptional regulator protein ptxE [Herminiimonas arsenicoxydans] Length = 285 Score = 70.9 bits (172), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 67/293 (22%), Positives = 128/293 (43%), Gaps = 10/293 (3%) Query: 3 IDILGVQAFVAIADQGSFQGAAGALHVTQTAVTLRLRKLEDFLGVTLIERTTRSIALTAI 62 ID+ ++ F+ +A G F+GAA ++Q+ +T +++LE L LI+R+ LT Sbjct: 2 IDLEKLETFLTVAKHGGFRGAAMHRGLSQSTLTQHIKQLERSLNAVLIDRSNAVSKLTTE 61 Query: 63 GQDFLPQARRLLAELAEALVEIRETGIARRGDVSIACVPTVGVQYLPRIMQAYSARYPHN 122 GQ LP A+ L+ + + + + RR ++I VG+ L ++ + R Sbjct: 62 GQALLPYAQMLID------ISKKASDLFRRSSLTIGASSNVGIYLLQPYLKEFQ-RRSGV 114 Query: 123 RIKILDHASSAVAEAVLRREVEFGINIAREHHPELVSMALTEDRYVLICHKDHPLARRRR 182 ++ I+ ++++A+ + R E++ + + + + VLI HP A R Sbjct: 115 KLDIVIADNTSIADKLQRLEIDVAVMEWWDSRSGFTASIWRSEELVLIVPTSHPWAGRST 174 Query: 183 IAWMQLQSYPLIFAGEVSGNRALLDPALKANGFVLRSFYEVQRSSTAVGLVAQGVGVGVA 242 I +L LI + +G +++ L A LR +Q ST A G+GV+ Sbjct: 175 IQLEELDGIELIGGEKGTGTGRIIERMLGARD--LRINVAMQLGSTEAVKHAVKAGLGVS 232 Query: 243 VVPKLAVQEGAYP-NVRMIELVDPVVSRTLVLITRKAAHLSPAAQALYDMIRE 294 VV AV + ++ + + + + +I R D +R+ Sbjct: 233 VVLAGAVTDEVLSRQFNVLRIDGDTLQKDIYVIHRNCTSADSVESKFVDFLRQ 285 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 449,660 Number of extensions: 14941 Number of successful extensions: 85 Number of sequences better than 1.0e-08: 19 Number of HSP's gapped: 76 Number of HSP's successfully gapped: 19 Length of query: 299 Length of database: 1,000,347 Length adjustment: 81 Effective length of query: 218 Effective length of database: 733,452 Effective search space: 159892536 Effective search space used: 159892536 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 128 (53.9 bits)