BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2255.p
         (501 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134094101|ref|YP_001099176.1| microcin B17 maturation protein...   506   e-144
gi|134094233|ref|YP_001099308.1| hypothetical protein HEAR0999 [...    57   3e-09

>gi|134094101|ref|YP_001099176.1| microcin B17 maturation protein
           [Herminiimonas arsenicoxydans]
          Length = 486

 Score =  506 bits (1303), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 261/477 (54%), Positives = 335/477 (70%), Gaps = 8/477 (1%)

Query: 29  ARWGLLTASGLDETQLLAGVSRALRKGGDYADLYLKSSIAESWHLERGKVARSNYNQSQG 88
           AR  LLT  GLDE+ L+  +        DYADLY + + +E W LE G V   +++  QG
Sbjct: 14  ARDVLLTPFGLDESVLIKTLGTMFTHRVDYADLYFQFTKSEGWSLEEGIVKTGSFSIDQG 73

Query: 89  FGLRLVEGEQSVLTSADRFDATAIGKAA----DLAADAVGHVPVSPAGLVLRLPKHGPTY 144
            G+R V G+++  + +D     A+ +AA     +A    G + V+ A   +     G   
Sbjct: 74  VGVRAVSGDKTAFSYSDEISERALMEAAIATRTIARQGAGKIKVASAIQQV----GGRDL 129

Query: 145 YTLDDPLPSLDAAHKIALLESVDRACRARSPLVVEVMASLSISLDLVFLARNDGYCGGDV 204
           Y  +DPL SLDA  K+ LLE ++R  RA+ P VV+VMA L+   D+V + R+DG    D+
Sbjct: 130 YLPNDPLTSLDATEKVKLLEKIERIARAKDPRVVQVMAGLAGEYDVVLVVRSDGVLAADI 189

Query: 205 RPLVRLDVAVQVVRNGRREGASRTLGGRVGLATFDRTAIESVAALAVDAALIKLEARAAP 264
           RPLVR+ + V   +NGRRE  S   GGR   A F    +E  A+ AV +AL+ LEAR AP
Sbjct: 190 RPLVRVSITVIAEQNGRREMGSSGGGGRYSYAYFSDELLEKYASEAVASALVNLEARPAP 249

Query: 265 AGTMTVVIGPGWNGVMLHEAVGHGLEGDFNRRGSSAFAGRIGQRVAAPGVTIVDDGTVPG 324
           AG MTVV+GPGW GV+LHEA+GHGLEGDFNR+GSSAF+GRIG+RVAA GVT+VDDGT+  
Sbjct: 250 AGPMTVVLGPGWPGVLLHEAIGHGLEGDFNRKGSSAFSGRIGERVAAKGVTVVDDGTIAD 309

Query: 325 SRGSLNIDDEGTPGQCTTLIEDGILVSYMQDSLNARLMGVANTGNGRRESYDVLPMPRMT 384
            RGSLNIDDEG P QCTTLIEDGIL  Y+QD++NARLM +  TGN RRES+  LPMPRMT
Sbjct: 310 RRGSLNIDDEGNPTQCTTLIEDGILKGYIQDTMNARLMNMPVTGNARRESFAHLPMPRMT 369

Query: 385 NTYMRAGGVDPAEIIASVKQGIYIAHLEGGQVDISSGRFMFAASEAFLIEDGRLSAPVKG 444
           NTYM  G  DPAEI+ASVK G+Y  +  GGQVDI++G+F+F+ASEA++IE+G+++ PVKG
Sbjct: 370 NTYMLGGDKDPAEILASVKNGLYAVNFGGGQVDITNGKFVFSASEAYMIENGKVTYPVKG 429

Query: 445 ATVLGNGPQSLKNVKLIGNDLEINTASGVCGKAGQSVPVGVGQPTLRIDGMTVGGTA 501
           AT++GNGP  L  V +IGND+ +++  GVCGK GQSVPVGVGQPTLRIDG+TVGGTA
Sbjct: 430 ATLIGNGPDVLNRVSMIGNDMSLDSGVGVCGKEGQSVPVGVGQPTLRIDGVTVGGTA 486


>gi|134094233|ref|YP_001099308.1| hypothetical protein HEAR0999
           [Herminiimonas arsenicoxydans]
          Length = 454

 Score = 56.6 bits (135), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 58/227 (25%), Positives = 95/227 (41%), Gaps = 16/227 (7%)

Query: 242 AIESVAALAVDAALIKLEARAAPAGTMTVV----IGPGWNGVMLHEAVGHGLEGDFNRRG 297
           A E++   A   AL +L AR        V+    +  G  G  +    G  L      R 
Sbjct: 218 APETIGRYAAQRALARLNARKLDTRKCPVLFEAPLAAGLLGAFVQAVSGGAL-----YRK 272

Query: 298 SSAFAGRIGQRVAAPGVTIVDDGTVPGSRGSLNIDDEGTPGQCTTLIEDGILVSYMQDSL 357
           S+     +G+   A  V I +D  V G+ GS   D+EG       +++DG++  Y   + 
Sbjct: 273 STFLLDSLGKSAFASHVQITEDPHVIGAVGSSPFDEEGVKTSRREVVKDGVVQGYFLSTY 332

Query: 358 NARLMGVANTGNGRRESYDVLPMPRMTNTYMRAGGVDPAEIIASVKQGIYIAHLEGGQVD 417
           +AR +G+  TGN    S+++     +T         D   ++  +  G+ +  L G  V+
Sbjct: 333 SARKLGMQTTGNA-GGSHNLTMTSSLTQP-----TDDFKAMLKKLDTGLLVTELMGQGVN 386

Query: 418 ISSGRFMFAASEAFLIEDGRLSAPVKGATVLGNGPQSLKNVKLIGND 464
             +G +   AS  F +E G +  PV+  T+ GN       V  IG D
Sbjct: 387 YVTGDYSRGAS-GFWVEKGVIQYPVEEITIAGNMKDIFMQVVAIGAD 432


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.317    0.135    0.388 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 986,470
Number of extensions: 43169
Number of successful extensions: 116
Number of sequences better than 1.0e-08: 2
Number of HSP's gapped: 114
Number of HSP's successfully gapped: 2
Length of query: 501
Length of database: 1,000,347
Length adjustment: 86
Effective length of query: 415
Effective length of database: 716,977
Effective search space: 297545455
Effective search space used: 297545455
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 131 (55.1 bits)