BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2253.p (594 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134093501|ref|YP_001098576.1| putative ABC transporter ATP-bi... 376 e-105 gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding pro... 92 1e-19 gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding pro... 72 6e-14 gi|134095128|ref|YP_001100203.1| putative transporter with ATPas... 72 9e-14 gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding pro... 67 2e-12 >gi|134093501|ref|YP_001098576.1| putative ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 593 Score = 376 bits (965), Expect = e-105, Method: Compositional matrix adjust. Identities = 209/550 (38%), Positives = 305/550 (55%), Gaps = 3/550 (0%) Query: 25 SIWWLFKSYWTSREAPVSALLAAFIVGSGFVGVYFSLRVNQWTGKFYDAIGSGRFGTIPA 84 ++W L + YW S E + L IV VY + N W +FY+A+ + + Sbjct: 10 AVWRLIQPYWVSEEKWRARGLLLTIVALALGMVYLEVLFNTWNREFYNALETKNYKVFTE 69 Query: 85 LLTLFLGLIMVTATLTISASVAADVLKLRWRTWLTTTLIDQWTRSGAYFRIERDKLLDNA 144 L F L + + I L++RWR WLT + +W AY+RIE+ DN Sbjct: 70 QLWRFSYLAFIFIAVAIYRIYLTQSLQMRWRMWLTKQYMARWLTHQAYYRIEQTHTADNP 129 Query: 145 DQRISEDVKLFVDYTVTITSHLLHVPVSAVTFSIVLWELSGSYLLELGHLAITIPAYMLF 204 DQRI+ED+ +++++ LL V+ V+F +LW +SG LG +T+P YM++ Sbjct: 130 DQRIAEDLNFLTSGSLSLSLGLLSSVVTLVSFIGILWSVSGPISFMLGTQEMTVPGYMVW 189 Query: 205 AVYLYSGTTLLLTHLLGRSLIPINIRQQKVEADFRALMVQIREGAEQIAFYDGANVEASR 264 Y+G L+ +G LI N QQ+ EADFR ++++RE AE +A Y G E+ + Sbjct: 190 FAIAYAGIGSLVVGWVGWPLIGKNFYQQRFEADFRFGLIRVRENAEAVALYRGEAEESVQ 249 Query: 265 LRSTFANIRANTWRIIRVAAQVMFGVQVPGQISSILPALLVLPQLMAGTMTLGGMMRVSA 324 L+ F IR N W I+R + Q ++I P L+ P+ +G +TLGG+M++S+ Sbjct: 250 LQGRFQRIRDNWWGIMRTTKSLNLVSTFYSQFANIFPFLMAAPRYFSGAITLGGLMQISS 309 Query: 325 AFGSVSSTLAYFPQAYQTFAAWRAVVRRLLALLDATEIKSPTFELTVLQRPQQTTIEVGA 384 AFG V L++F A+ AAW+A V RL A E + I + Sbjct: 310 AFGQVQGALSWFISAFSDLAAWKASVNRLAGFHAAVETAHADAGGVTVTVNNVGAILIEN 369 Query: 385 LTLTDPHGNPLSRIPAFAVKRGARCLIRGRSGSGKSTLLRALAGIWPFGVGSIAVPTRTS 444 L L P G PL+ + ++RG R LI G SG GKSTL+RA+AGIW +G G I +P + Sbjct: 370 LKLDLPDGQPLTSSLSADIQRGQRILIAGPSGCGKSTLIRAIAGIWLYGNGGIEIPHQWK 429 Query: 445 MMFVPQKSYVPVGSLRQALAYPGAEADVSDALAQDILTAVGLAQFLPVLDQPDRWGGRLS 504 ++F+PQKSY+P+ +LR A+AYP +E+ +D Q L LDQ D W RLS Sbjct: 430 LLFLPQKSYLPITTLRAAVAYPASESSYTDLAIQYYFDLCRLPHLKQQLDQVDNWSQRLS 489 Query: 505 GGEQQRLAFARILIARPEHIFIDEATSALDDESEQRMYSLLLERLPHSTLISVAHRKEVA 564 GEQQR+AF R L+ RP+ +F+DEA+SALD E+E+ MY L+L+ LP + +ISVAHR+ VA Sbjct: 490 PGEQQRVAFVRALLTRPDALFMDEASSALDTETEELMYQLILQELPEAAMISVAHRESVA 549 Query: 565 AFHD---QFV 571 + HD QFV Sbjct: 550 SHHDIRWQFV 559 >gi|134093506|ref|YP_001098581.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 648 Score = 91.7 bits (226), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 95/339 (28%), Positives = 147/339 (43%), Gaps = 43/339 (12%) Query: 250 EQIAFYDGANVEASRLRSTFANIRANTWRIIRVAAQVMFGVQVPGQISSILPALLVL--- 306 E + ++ + EA R + V +Q V GQ S I A+ ++ Sbjct: 251 ETVKYFGNEDYEAKRYDEGLKR-----YETAAVKSQTSLSVLNTGQSSIIAVAVTLILWR 305 Query: 307 --PQLMAGTMTLGGMMRVSAAFGSVSSTLAYFPQAYQTFAAWRAVVRRLLALLDA-TEI- 362 +++GTMTLG ++ V+A + L + Y+ A + RL +LLD EI Sbjct: 306 ATQGVISGTMTLGDLVLVNAFMIQLYIPLNFLGVIYREIKQSLADMERLFSLLDQHREIA 365 Query: 363 KSPTFELTVLQRPQQTTIEVGALTLTDPHGNPLSRIPAFAVKRGARCLIRGRSGSGKSTL 422 P + V+Q + VG + + F + G + G SGSGKSTL Sbjct: 366 DKPNTQALVVQGAEVKFSHVG---FSYEAKRQILFDVDFTIAAGTTTAVVGHSGSGKSTL 422 Query: 423 LRALAGIWPFGVGSIAVP-----------TRTSMMFVPQKSYVPVGSLRQALAY--PGAE 469 R L + G+I + R ++ VPQ + + ++ +AY PGA Sbjct: 423 SRLLFRFYDVNEGAILIDGQDVRDVTQASLRNAIGIVPQDTVLFNDTIEYNIAYGKPGAS 482 Query: 470 ADVSDALAQDILTAVGLAQFLPVLDQ-PDRW-------GGRLSGGEQQRLAFARILIARP 521 D DI+ A A ++ PD + G +LSGGE+QR+A AR L+ P Sbjct: 483 KD-------DIVAAAKSAYIHDFIESLPDGYATMVGERGLKLSGGEKQRVAIARTLLKHP 535 Query: 522 EHIFIDEATSALDDESEQRMYSLLLERLPHSTLISVAHR 560 + DEATSALD ++EQ + + L E T + +AHR Sbjct: 536 AILIFDEATSALDSKAEQAIQAQLKEIAKDRTTMVIAHR 574 >gi|134096161|ref|YP_001101236.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 618 Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 56/190 (29%), Positives = 93/190 (48%), Gaps = 19/190 (10%) Query: 403 VKRGARCLIRGRSGSGKSTLLRALAGIWPFGVGSIAV-----------PTRTSMMFVPQK 451 ++ G + + GRSG+GKST++ L + G I + R + V Q Sbjct: 383 IRPGEKVGLVGRSGAGKSTIVNLLLRFYDLEQGRILIDGQDIAHVTQNSLRAQVGMVTQD 442 Query: 452 SYVPVGSLRQALAY---PGAEADVSDAL----AQDILTAVGLAQFLPVLD-QPDRWGGRL 503 + + S+R + Y +EAD+ DA A D + + A+ D G +L Sbjct: 443 TSLLHRSVRDNILYGRPDASEADMIDAAKRAEAHDFILTLSDAKGRTAYDAHVGERGVKL 502 Query: 504 SGGEQQRLAFARILIARPEHIFIDEATSALDDESEQRMYSLLLERLPHSTLISVAHRKEV 563 SGG++QR+A AR+++ + +DEATSALD E E + + L E + T++++AHR Sbjct: 503 SGGQRQRIAIARVMLKDAPILLLDEATSALDSEVEAAIQTSLYELMEGKTVVAIAHRLST 562 Query: 564 AAFHDQFVDL 573 A D+ + L Sbjct: 563 IAAMDRLIVL 572 >gi|134095128|ref|YP_001100203.1| putative transporter with ATPase [Herminiimonas arsenicoxydans] Length = 585 Score = 71.6 bits (174), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 72/290 (24%), Positives = 129/290 (44%), Gaps = 23/290 (7%) Query: 311 AGTMTLGGMMRVSAAFGSVSSTLAYFPQAYQTFAAWRAVVRRLLALLDATEIKSPTFELT 370 A +T+G ++ S G +S L+ ++ L T+ + T E+ Sbjct: 296 ANALTVGALIASSMLVGRAASMLSSVAMVLGRIDTFKQARTSFEELFVDTQNTNKTNEV- 354 Query: 371 VLQRPQ-QTTIEVGALTLT-DPHGNPLSRIPAFAVKRGARCLIRGRSGSGKSTLLRALAG 428 R Q + I+V L+ + P + + +F + G + + GRSGSGKSTLLR LAG Sbjct: 355 --DRQQIEGRIQVANLSFSIKPDEPAMLKQISFIINPGEKVGLVGRSGSGKSTLLRCLAG 412 Query: 429 IWPFGVG-------SIAVPTRT----SMMFVPQKSYVPVGSLRQALAYPGAEADVSDALA 477 + VG S+A ++ S+ + PQ ++ G+L + + +S ++ Sbjct: 413 VHAPDVGQVLMDGISVAAYSQEVRMRSIAYKPQDPFLFDGTLASNIFI---DNTISTSIY 469 Query: 478 QDILTAVGLAQFLP----VLDQPDRWGGRLSGGEQQRLAFARILIARPEHIFIDEATSAL 533 Q L + + L LDQ G LSGG++Q +A AR + + P + +DE T+ + Sbjct: 470 QIALHVSCMDELLAGGQLRLDQMLVAPGNLSGGQRQMVALARAIASTPNVLLLDEPTTGV 529 Query: 534 DDESEQRMYSLLLERLPHSTLISVAHRKEVAAFHDQFVDLTPDAVAASAP 583 D +E ++ L+ + TL+ H + D+ + + + A P Sbjct: 530 DQMTENKIIERLVAFAANRTLVVATHSPVLLKQMDRIIVINDGKIVADGP 579 >gi|134094055|ref|YP_001099130.1| ABC transporter ATP-binding protein [Herminiimonas arsenicoxydans] Length = 376 Score = 67.0 bits (162), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/195 (32%), Positives = 95/195 (48%), Gaps = 35/195 (17%) Query: 400 AFAVKRGARCLIRGRSGSGKSTLLRALAGIWPFGVGSI-------------AVP-TRTSM 445 +FA++RG + G+SG GK+T+LRA+AG P GSI A P TR Sbjct: 38 SFALQRGQIGCLLGQSGCGKTTVLRAIAGFEPLTEGSITLGGKEISNAHFTATPETRQIG 97 Query: 446 MFVPQKSYVP-------VGSLRQALAYPGAEADVSDALAQDILTAVGLAQFLPVLDQPDR 498 + + P VG + LA P +A ++ +LT VGLA Q + Sbjct: 98 VVFQDYALFPHLSVADNVGFGLRKLAAPERQARIAA-----LLTLVGLAS------QGKK 146 Query: 499 WGGRLSGGEQQRLAFARILIARPEHIFIDEATSALDDESEQRMYSLLLERLPH--STLIS 556 + LSGG+QQR+A AR L +P+ + +DE S LD + +R+ S + + L +T + Sbjct: 147 FPHELSGGQQQRVALARALAPQPDLLLLDEPFSNLDVDLRERLASEVRDILKEVGTTAVL 206 Query: 557 VAH-RKEVAAFHDQF 570 V H + E A DQ Sbjct: 207 VTHDQHEAFAIADQI 221 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.323 0.135 0.398 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 992,212 Number of extensions: 38095 Number of successful extensions: 253 Number of sequences better than 1.0e-08: 16 Number of HSP's gapped: 245 Number of HSP's successfully gapped: 16 Length of query: 594 Length of database: 1,000,347 Length adjustment: 87 Effective length of query: 507 Effective length of database: 713,682 Effective search space: 361836774 Effective search space used: 361836774 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 131 (55.1 bits)