BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2251.p
         (243 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093598|ref|YP_001098673.1| biopolymer transport ExbB prote...   213   1e-56
gi|134095826|ref|YP_001100901.1| biopolymer transport ExbB prote...   175   2e-45
gi|134095581|ref|YP_001100656.1| inner membrane protein [Hermini...    88   4e-19

>gi|134093598|ref|YP_001098673.1| biopolymer transport ExbB protein
           [Herminiimonas arsenicoxydans]
          Length = 242

 Score =  213 bits (541), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 108/222 (48%), Positives = 148/222 (66%), Gaps = 4/222 (1%)

Query: 4   YGLANVWLQGDVVTRFLITILLGMSSVSWIVMIVKGMANRRLSRIGLQAHKEFWAAHSIE 63
           YGL ++W QGD VT+ +  +L+ MS  SW V+  K +   +  R    A  EFW A S+ 
Sbjct: 6   YGLESLWSQGDFVTKGVAILLVAMSIASWYVIATKALQLMQYRRAARAAGHEFWDATSLS 65

Query: 64  GGIAAIGAGTDNPYSNIATAAVEA--HAQKDQPLLEGSTSNTEWVAYCVRNALDEQIAHL 121
            G A +G+G  NP+++IA A V A  H +  +  L    S ++W+   +R A+DE  A L
Sbjct: 66  EGTATLGSG--NPFASIAEAGVTAMRHHEAHKGHLHDELSVSDWITLSLRQAIDETSAKL 123

Query: 122 QGGLAVLASIGSTSPFIGLFGTVWGIYHALITIGASGQASLDHVAGPVGESLVMTAVGLF 181
           Q G+AVLAS+GST+PF+GLFGTVWGIYHAL+ IG SGQAS+D VAGPVGE+L+MTA+GL 
Sbjct: 124 QTGMAVLASVGSTAPFVGLFGTVWGIYHALVAIGTSGQASIDKVAGPVGEALIMTALGLA 183

Query: 182 VAIPAVLGYNYVSRGNRTVAQKLMRFSHQLHVYYVTGNKMKE 223
           VAIPA  GYN + RGN+++  K+ +F   LH  +VTG +  +
Sbjct: 184 VAIPATFGYNALVRGNKSLIAKMNKFGFDLHALFVTGARAND 225


>gi|134095826|ref|YP_001100901.1| biopolymer transport ExbB protein
           [Herminiimonas arsenicoxydans]
          Length = 230

 Score =  175 bits (443), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 99/226 (43%), Positives = 138/226 (61%), Gaps = 11/226 (4%)

Query: 2   ENYGLANVWLQGDVVTRFLITILLGMSSVSWIVMIVKGMANRRLSRIGLQAHKEFWAAHS 61
           +  GL++ W QGD V+  +   LL MS +SW  ++ KG +  R+ R    A + FW A +
Sbjct: 8   QGLGLSHYWAQGDAVSHAVAYALLIMSILSWYYILSKGWSAWRIRR-SAAALENFWQAPT 66

Query: 62  IEGGIAAIG-AGTDNPYSNIATAAVEA-----HAQKDQPLLEGSTSNTEWVAYCVRNALD 115
           +   IAAI    ++N Y+ +A  +VEA     HA      L  +T   E +   +R  ++
Sbjct: 67  LPDAIAAIRLTDSENVYTPLAAQSVEAANITPHANS----LNANTDPGELITRTLRQEIN 122

Query: 116 EQIAHLQGGLAVLASIGSTSPFIGLFGTVWGIYHALITIGASGQASLDHVAGPVGESLVM 175
              + L+ GL +LAS+GST+PFIGLFGTVWGIYHAL+ + ASG   +D VAGPVGE+L+M
Sbjct: 123 RVSSRLENGLTLLASVGSTAPFIGLFGTVWGIYHALVAVSASGTVQIDKVAGPVGEALIM 182

Query: 176 TAVGLFVAIPAVLGYNYVSRGNRTVAQKLMRFSHQLHVYYVTGNKM 221
           TA+GL VAIPAVL YN  +R NR    +L  F+H LH Y  TG ++
Sbjct: 183 TALGLAVAIPAVLAYNAFTRVNRITLAELDAFAHDLHAYLTTGTRV 228


>gi|134095581|ref|YP_001100656.1| inner membrane protein
           [Herminiimonas arsenicoxydans]
          Length = 230

 Score = 87.8 bits (216), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 15/208 (7%)

Query: 15  VVTRFLITILLGMSSVSWIVMIVKGMANRRLSRIGLQAHKEFWAAHSIEGGIAAI--GAG 72
           V+ + ++ +L+G+S +SW  +  K  A +       +  + FW+     G + A+   A 
Sbjct: 18  VLVQLVMALLVGVSVMSWTYIFRKMFAIKNARTQTEEFERAFWSG----GDLNALYQDAT 73

Query: 73  TDNPYSNIATAAVE-------AHAQKDQPLLEGSTSNT--EWVAYCVRNALDEQIAHLQG 123
           ++   S+ +T A+E       +   K +   + S ++   +     +R A   ++  L+ 
Sbjct: 74  SNRRKSSGSTGALERIFEAGMSEFNKSRASHDPSQASVRLDGARRAMRAAYQREMDGLES 133

Query: 124 GLAVLASIGSTSPFIGLFGTVWGIYHALITIGASGQASLDHVAGPVGESLVMTAVGLFVA 183
            LA LAS+GS SP++GLFGTVWGI ++   +    QA+L  VA  + E+L+ TA+GLF A
Sbjct: 134 HLAFLASVGSVSPYVGLFGTVWGIMNSFRGLANVQQATLAAVAPGIAEALIATAIGLFAA 193

Query: 184 IPAVLGYNYVSRGNRTVAQKLMRFSHQL 211
           IPAV+ YN  S     +A +   F  + 
Sbjct: 194 IPAVVAYNRYSHDIDRLAMRFESFVEEF 221


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.319    0.132    0.392 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 441,578
Number of extensions: 16129
Number of successful extensions: 60
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 58
Number of HSP's successfully gapped: 3
Length of query: 243
Length of database: 1,000,347
Length adjustment: 79
Effective length of query: 164
Effective length of database: 740,042
Effective search space: 121366888
Effective search space used: 121366888
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 127 (53.5 bits)