BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2249.p (793 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094592|ref|YP_001099667.1| putative ferrisiderophore recep... 192 6e-50 gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-de... 75 1e-14 gi|134096547|ref|YP_001101622.1| catecholate siderophore recepto... 62 1e-10 >gi|134094592|ref|YP_001099667.1| putative ferrisiderophore receptor [Herminiimonas arsenicoxydans] Length = 725 Score = 192 bits (487), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 201/701 (28%), Positives = 312/701 (44%), Gaps = 72/701 (10%) Query: 133 LPLISVAA---TADSGGTGFVAENSATFSRTDTPLSETPKSVSVINAAVIQSQSAQTLSD 189 LP ++V+ TA G+ A S+T ++TDT L+ET ++V+V+ I Q A L D Sbjct: 57 LPAVNVSGVQETATGPVIGYRATRSSTATKTDTSLAETLQAVTVVTRDQIVDQGATNLQD 116 Query: 190 VLRNASGVVTRPGPYGVPS----FVIRGYAGTAPVMSDGLSA----YGSAASPAALTPTI 241 L A+GV R YG+ S ++RG + V DGL Y SAA P T Sbjct: 117 ALTYAAGV--RSDAYGLDSRTDSVLVRG--ASPDVYIDGLRQANDYYTSAARPDPFT--- 169 Query: 242 AIASVEVVKGPSAIMAADAPPGGVVNVIKKAPQVEPFHEVQVAYGSNNFSQVAFDSTGAI 301 + +EV++GP+A+ GGVVN++ K PQ E EV V G+ Q+ D TG + Sbjct: 170 -LERIEVLRGPAAMSYGQGSTGGVVNLVSKRPQAEFQGEVGVQLGNFGRKQLQADVTGPL 228 Query: 302 DEDKRLRYRFVVSADKSSENSMGYDGGHHFYIAPTLQWK-DRSTDLTLGYSHTVTRDPFP 360 EDK+ YR V A ++++ + Y IAP+L WK + T LTL + R Sbjct: 229 TEDKQWLYRLVAVA-RNADTQVDYVKDDRTLIAPSLTWKPNGVTSLTLQGLYQRDRTGST 287 Query: 361 QYTVGYAK--GGYVDGYI--EHPLGNRGDDFSMTADELTAKLEQKLSDNLTFVSKNGY-- 414 + +A V+G I +G GD + L E +L+DN TF Y Sbjct: 288 SQFLPWAGMLTPNVNGMIPTSRFIGEPGDRYDTDRQSLGYLFEHQLNDNWTFRQNFRYAV 347 Query: 415 -----------TSTTQGQNGWAAASTISKSNSLTLLGF---KSSANYYTANSQNYLRLKS 460 + +T G I N L+G S A +L+ K Sbjct: 348 NEVDYFTHYADSFSTDPSTGLPGGWAIDPVNQ-RLIGRYADDSITKVKIATIDQHLQAKL 406 Query: 461 DLGSVKSTALVGVDYSYMHYAQYDRNS----SSITTIPNIFGTINVAPISS-PLTYQFGG 515 G ++ L G+DY+ Q DR S +I ++G VA ++ P + Q Sbjct: 407 QTGPLQHDLLAGLDYTRY---QRDRQSGFGMDTIDVYAPVYGNGVVATLADDPQSVQ--- 460 Query: 516 QTQRVGSYLQEQL-MYSNLTVLASIRRDSYLSSTNIVGRAPSGGLHQTAYSPSLGLMYQL 574 +++G YLQ+Q+ + N V A +R D ++ A S A + +G+MY L Sbjct: 461 --RQIGLYLQDQIKIGKNWIVSAGLRHDRVNNAL-----AGSEDEESRATTKRVGVMYLL 513 Query: 575 TPEIAPYVNWNKGFQPNNVTTYSGGLLPPMQSEQFEAGVKFNLMDDKLNLTTALYHIDYT 634 +PYV++++ F P T P++ EQ E GVK+ ++ T A++ ID Sbjct: 514 ENGWSPYVSYSESFTPVAGTNAYDQRFKPVRGEQIEGGVKYMPVNGHSQFTAAIWKIDEK 573 Query: 635 NQNIADPLHRGFYLPTGGAVSQGLEVELKGQIMPGMNVVAQYAYNNYVQNYAPTIKVNLP 694 N++ DP + + G ++G+E+E K I P ++V+A Y Y + + +P Sbjct: 574 NKSTTDPSNPLNQIQVGQTKNRGVELEWKASITPTIDVLAHYNYTDLDEQLD-----EVP 628 Query: 695 RHTGSIWTTYNFRSPALQGLGVGMGV-FMSSGQD-VGNTGNYHLPGQTETDLGLFYKMEK 752 RH + W + F + G +G G +MSS +D V T P T D L + Sbjct: 629 RHQAAAWGKWRFSIGGVSGFALGAGARYMSSFRDGVAPT----TPSVTLLDALLSWDTMN 684 Query: 753 YSLNLSVKNLFNHKLYSSSTSATFIPMGPERTLMLTGTYDF 793 + L+V NL + ++ S G R+ +LT TY F Sbjct: 685 WRYALNVNNLTDKVYNATCLSRGDCWYGARRSAVLTATYKF 725 >gi|134093326|ref|YP_001098401.1| putative outer membrane TonB-dependent receptor protein [Herminiimonas arsenicoxydans] Length = 716 Score = 75.1 bits (183), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 154/711 (21%), Positives = 283/711 (39%), Gaps = 78/711 (10%) Query: 133 LPLISVAATADSGGTGFVAENSATFSRTDTPLSETPKSVSVINAAVIQSQSAQTLSDVLR 192 LP + V + ++S G +A N++ +D PL ETP S+SVI +Q +S ++ +D ++ Sbjct: 34 LPEVVVMSDSESDG---IARNASVGGFSDAPLRETPASISVITHEQMQDRSIRSATDAVK 90 Query: 193 NASGVVTRPGPYGVPS-FVIRGYAGTAPVMSDGLSAYGSAASPAALTPTIAIASVEVVKG 251 + V G+ F IRG+ M G ++ P EV+KG Sbjct: 91 YDASVQNAYNAVGLADWFSIRGFTLD---MGSNYRKDGMVVLAHSMIPMENKERFEVLKG 147 Query: 252 PSAIMAADAPPGGVVNVIKKAPQVEPFHEVQVAYGSNNFSQVAFDSTGAIDEDKRLRYRF 311 + + A GG++N + K P EP V + A D G D DKR YR Sbjct: 148 LAGLQVGMASSGGILNYVVKRPTNEPLRSVTLEASERGTLYGAVDLGGRSD-DKRFGYRI 206 Query: 312 VVSADKSSENSMGYDGGHHFYIAPTLQWK---DRSTDLTLGYSHTVTRDPFPQYT-VGYA 367 + G +G F ++ W+ + L Y H ++ P + +G A Sbjct: 207 NAAGADIKSYVQGSNGERQF-VSGAFDWRLSPKALLQIDLDYHHK-SQLSVPGFQLLGPA 264 Query: 368 KGGYVDGYIEHPLGNRGDDFSMTAD----------ELTAKLEQKLSDNLTFVSKNGYTST 417 + + L N+ +T D EL + L N + ++ + Sbjct: 265 QRIPTGVSAKTMLNNQSWSLPVTDDTNNLGIKFEYELNEQWHTTLQANKFELRRDDAVAL 324 Query: 418 TQGQNGWAAASTISKSNSLTLLGFKSSANYYTANS-QNYLRLKSDLGSVKSTALVGVDYS 476 G + + + + + T S Q L+ K + G++K +G+ S Sbjct: 325 ASGCVAEGLSPGYCADGTFNMYDLRRDNDKRTVMSTQAMLQGKFNAGTIKHDLTLGM--S 382 Query: 477 YM----HYAQYDRNSSSITTI--PNIFGTINVAPISSPLTYQFGGQTQRVGSYLQEQLMY 530 M +YA + S+ +I P + + + P ++P++ + + + V ++Q+ L Sbjct: 383 TMNRRDNYANFLFESAGTGSIYYPK-YNPLTLGP-TNPVSLRRKDEERSV--FVQDVLTL 438 Query: 531 SNLTVLASIRRDSYLSSTNIVGRAPSGGLHQTAYS----PSLGLMYQLTPEIAPYVNWNK 586 ++ L + R + L T SGGL + P++ L++ + Y +++ Sbjct: 439 NDKFKLHAGMRYTQLQRTQFTS---SGGLFRHTDKDFLLPNVALVFSPQSNWSIYGTYSQ 495 Query: 587 GFQPNNVTTYSGGL------LPPMQSEQFEAGVKFNLMDDKLNLTTALYHIDYTNQNIAD 640 G +P GL L P +S Q E G+K +L D +++ AL+ I + + N Sbjct: 496 GLEPG--AEVPSGLVNEETVLDPNKSRQVEIGIKADLSQD-ISVAAALFQI-HRDNNYTS 551 Query: 641 PLHRGFYLPTGGAVSQGLEVELKGQ------IMPGMNVVAQYAYNNYVQNYAPTIKVNLP 694 L+ Y+ G V +GLE+ +G+ + M + +A N N+P Sbjct: 552 GLN---YVTAGKEVHRGLELSAQGRATRNLTLGASMTTLQAFAENTGDARVEGKRIGNVP 608 Query: 695 RHTGSIWTTYNFRSPALQGLGV-GMGVFMSSGQDVGNTG----NYHLPGQTETDLGLFYK 749 +++ Y P + L + M ++ SS N N + G ++G YK Sbjct: 609 VLKSAVFMDYTL--PQMPALKLNAMWIYSSSKVFAPNAQISELNKKVDGYHVLNVGAQYK 666 Query: 750 ME----KYSLNLSVKNLFNHKLYSSSTSA---TFIPMGPERTLMLTGTYDF 793 + K + + N+F+ + +++A IP P R L+ +DF Sbjct: 667 TKVSGTKTTFRFGIDNVFDKFYWGDASNAYGGYLIPGAP-RVFRLSAQFDF 716 >gi|134096547|ref|YP_001101622.1| catecholate siderophore receptor Fiu [Herminiimonas arsenicoxydans] Length = 759 Score = 61.6 bits (148), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 87/191 (45%), Gaps = 15/191 (7%) Query: 133 LPLISVAATADSGGTGFVAENSATFSRTDTPLSETPKSVSVINAAVIQSQSAQTLSDVLR 192 LP + V T +S V+ S F++ PL T ++++VI ++Q Q TL++ LR Sbjct: 42 LPEVEVHGTTESYKADTVS--SPKFTQ---PLLNTTQTITVIKKELVQQQGGATLTEALR 96 Query: 193 NASGVVTRP-GPYGV----PSFVIRGYAGTAPVMSDGLSAYGSAASPAALTPTIAIASVE 247 N GV T G G + +RG+ ++ + DG+ GS + I +E Sbjct: 97 NTPGVGTFSLGENGNTNTGDAIYMRGFDTSSSIFVDGVRDLGSISRD-----IFNIEQIE 151 Query: 248 VVKGPSAIMAADAPPGGVVNVIKKAPQVEPFHEVQVAYGSNNFSQVAFDSTGAIDEDKRL 307 V KGP+ P G +N+ K P ++ + V+ GS ++ ++ D +D D Sbjct: 152 VTKGPAGADTGRGSPTGSINLSTKQPTMKEAYSGSVSVGSGDYKRITADLNKPLDFDGGA 211 Query: 308 RYRFVVSADKS 318 +R + D S Sbjct: 212 AFRINLLKDDS 222 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.313 0.129 0.368 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 1,476,946 Number of extensions: 61291 Number of successful extensions: 147 Number of sequences better than 1.0e-08: 3 Number of HSP's gapped: 147 Number of HSP's successfully gapped: 4 Length of query: 793 Length of database: 1,000,347 Length adjustment: 89 Effective length of query: 704 Effective length of database: 707,092 Effective search space: 497792768 Effective search space used: 497792768 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits) S2: 133 (55.8 bits)