BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0001.2248.p
         (154 letters)

Database: BlastDatabases/690/690 
           3295 sequences; 1,000,347 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|134093411|ref|YP_001098486.1| leucine-responsive regulatory p...    96   6e-22
gi|134096351|ref|YP_001101426.1| high-affinity branched-chain am...    83   7e-18
gi|134093985|ref|YP_001099060.1| putative transcriptional regula...    72   1e-14

>gi|134093411|ref|YP_001098486.1| leucine-responsive regulatory
           protein [Herminiimonas arsenicoxydans]
          Length = 155

 Score = 96.3 bits (238), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 52/150 (34%), Positives = 82/150 (54%), Gaps = 1/150 (0%)

Query: 2   IDRTDRRILEILQEDSTRAVAEIAECVNLSTTPCWRRIQKLEAEGVIKRRVVLLDAEKLN 61
            DR DR +LE LQ     +  E++E VNLS   C+RR+Q+LE EGVI+    L+DA  L 
Sbjct: 4   FDRYDRILLETLQSKGRVSNVELSERVNLSPPQCYRRVQRLEQEGVIRGYAALVDAAALG 63

Query: 62  VSVTVLVEIKTRQHSASWLKKFRDVVTCIPEVVEVYRMSGHIDYMLKVMVPNIGAYDS-V 120
           + VT  V +   +     +++    +   PE++E Y +SG  DY+LKV+  ++ +  S +
Sbjct: 64  LGVTAFVNLNIAREQFKQVRELEQAIRQFPEILECYTISGDFDYLLKVVATDLKSLSSFL 123

Query: 121 YKRLISAVELDDVSSSFSMETLKSTTALPL 150
             RL+    +  V S   +E +K  + LPL
Sbjct: 124 TDRLMQVPGVAGVRSMVCLEEIKPASPLPL 153


>gi|134096351|ref|YP_001101426.1| high-affinity branched-chain amino
           acid transport system; global regulatory protein, Leu
           responsive; site-specific blocking of 549 methylation
           [Herminiimonas arsenicoxydans]
          Length = 157

 Score = 82.8 bits (203), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 49/147 (33%), Positives = 83/147 (56%), Gaps = 1/147 (0%)

Query: 1   VIDRTDRRILEILQEDSTRAVAEIAECVNLSTTPCWRRIQKLEAEGVIKRRVVLLDAEKL 60
           ++D  DRRIL  LQ DS++   ++A  V+ S   C RR+++L   GVI+R+V ++  +K+
Sbjct: 7   LLDELDRRILNALQGDSSQTNNDLALAVHASPPTCLRRVKRLVDAGVIERQVAIVSPQKI 66

Query: 61  NVSVTVLVEIKTRQHSASWLKKFRDVVTCIPEVVEVYRMSGHIDYMLKVMVPNIGAYDSV 120
              +T +VEI     +A    +F  VV     V++ YR+S   D++L + V ++ AY+++
Sbjct: 67  GAGLTAIVEITLDNQAAERQVEFETVVAGESAVLQCYRVSPGPDFVLVIQVADMPAYNAL 126

Query: 121 YKRLI-SAVELDDVSSSFSMETLKSTT 146
             RL  S   + +V S FS+   K  T
Sbjct: 127 VHRLFASHANVRNVKSFFSIHRSKFET 153


>gi|134093985|ref|YP_001099060.1| putative transcriptional regulator
           [Herminiimonas arsenicoxydans]
          Length = 169

 Score = 72.4 bits (176), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 44/150 (29%), Positives = 75/150 (50%), Gaps = 1/150 (0%)

Query: 2   IDRTDRRILEILQEDSTRAVAEIAECVNLSTTPCWRRIQKLEAEGVIKRRVVLLDAEKLN 61
           +D+ DR++L +LQ+D+      +A+ V++S   C RRI+ +   G+I   V ++D   L 
Sbjct: 7   LDKVDRKLLNLLQKDNQIPTRILADKVHISQPTCLRRIRDMRDAGIISADVAMIDPFALG 66

Query: 62  VSVTVLVEIKTRQHSASWLKKFRDVVTCIPEVVEVYRMSGHIDYMLKVMVPNIGAYDSVY 121
             +   +E+     S   + +F   +   PEV++ Y +SG  DY L V V ++ AY    
Sbjct: 67  YGMLAFLEVSLANQSDEHMLEFETRMNREPEVMQCYFVSGDYDYFLVVHVVDMDAYYQFV 126

Query: 122 KRLISAV-ELDDVSSSFSMETLKSTTALPL 150
           +R IS    +    S F M+  K  T + L
Sbjct: 127 RRAISGSGNVRHFQSRFPMKRAKFDTRIAL 156


  Database: BlastDatabases/690/690
    Posted date:  Apr 9, 2011  4:48 AM
  Number of letters in database: 1,000,347
  Number of sequences in database:  3295
  
Lambda     K      H
   0.321    0.133    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 3295
Number of Hits to DB: 245,231
Number of extensions: 7923
Number of successful extensions: 28
Number of sequences better than 1.0e-08: 3
Number of HSP's gapped: 28
Number of HSP's successfully gapped: 3
Length of query: 154
Length of database: 1,000,347
Length adjustment: 74
Effective length of query: 80
Effective length of database: 756,517
Effective search space: 60521360
Effective search space used: 60521360
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 125 (52.8 bits)