BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.2245.p (491 letters) Database: BlastDatabases/690/690 3295 sequences; 1,000,347 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|134094028|ref|YP_001099103.1| bifunctional transcriptional re... 321 6e-89 gi|134095984|ref|YP_001101059.1| transcription regulator GntR [H... 138 7e-34 gi|134094032|ref|YP_001099107.1| putative aminotransferase [Herm... 106 3e-24 gi|134093921|ref|YP_001098996.1| MocR family transcriptional reg... 82 9e-17 >gi|134094028|ref|YP_001099103.1| bifunctional transcriptional regulator/amino transferase [Herminiimonas arsenicoxydans] Length = 486 Score = 321 bits (822), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 182/447 (40%), Positives = 269/447 (60%), Gaps = 8/447 (1%) Query: 32 LVDRIFTAVLEGVRTRRLAHGDKLPSLRVVAESAQVSRDTVARAYEKLVAHGHVYTRPGA 91 L+ +I V + + L G ++PS+R ++ +VSR TV AY++LVA G + +R G+ Sbjct: 31 LIAQIVQLVTARIDDKLLRTGARMPSIRQFSDQHKVSRFTVVEAYDRLVAGGLLESRRGS 90 Query: 92 GFFIRVDNQV--ANAQ-TPAVPAPLLTNWRQRLLDPRTLLHRGLGSGDLPPDWLNVPQLA 148 GF++R + AQ T P+ W R + + + G G LP +WL+ +A Sbjct: 91 GFYVRDRTPMLAPRAQRTNTARQPVDVVWLVRNMFRQLPPQKMPGVGLLPNEWLDADLVA 150 Query: 149 ATLRAVSRSNINWAAGYGDAQGYLPLRQQLQRKLADIGIDVTPRQVLTTLGATDAINLIV 208 LRAVSR N+ YG+ QG+LPLRQQLQ KLA++ I TP Q +TTLG T A++L+ Sbjct: 151 NALRAVSRQNLPLQ--YGNPQGFLPLRQQLQLKLAELEISATPDQFVTTLGVTQALDLVA 208 Query: 209 MSYLRQPGMTVLVDDPGSFLLMDRLLASGMHIIGVTRDADGPDITALQNACEQHGPAFYF 268 Y+ QPG T+ VDDP FL+ G ++G+ R DGPDI L H P + Sbjct: 209 RHYI-QPGDTIFVDDPAWFLMFGSFAMLGAKVVGIPRLPDGPDIAQLAELAALHRPKLFV 267 Query: 269 CQSLLHSPGYTGLSPQRAFQILRLAERFNFTIVEDDTYGDLAPVHRPPHATRLASLDQLQ 328 S+LH+P T LS +AFQ+L++AE+++F IVEDD Y D+ P ATR+A+LDQL Sbjct: 268 INSVLHNPTSTSLSAAKAFQVLKIAEQYDFMIVEDDIYCDMHPGTTVQPATRIAALDQLN 327 Query: 329 HVLYVGSFSKTLGAGMRVGFIAGNPQQIEWLLLYKLVSRASNGSLAERMIYRLLSEGGYR 388 V+Y+G FSKTL A +RVGFIA +P+ + L K+++ + + ER++YR+LSEG YR Sbjct: 328 RVIYLGGFSKTLAANLRVGFIATSPEIAKHLCDRKMLTTLTTTEITERVVYRILSEGHYR 387 Query: 389 RHCEQLRARLDQARPRLMAALEALGIVLQHRPDAGLYLWGRLPGDLNAMEVAERMLANGY 448 +H ++LR +LD R + + +E +GI + AG+++W + D NA+ ER + GY Sbjct: 388 KHADRLRNKLDAVRDKTVRQMERIGIKINISTPAGMFVWTDVGCDSNAL--TERAMEQGY 445 Query: 449 LTAPGPVFSSGEAARSHMRFNVASSDD 475 L APG +FS + ++MRFNVA+ D Sbjct: 446 LLAPGSLFSPNQLPSTNMRFNVAAMAD 472 >gi|134095984|ref|YP_001101059.1| transcription regulator GntR [Herminiimonas arsenicoxydans] Length = 470 Score = 138 bits (347), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 123/451 (27%), Positives = 209/451 (46%), Gaps = 19/451 (4%) Query: 36 IFTAVLEGVRTRRLAHGDKLPSLRVVAESAQVSRDTVARAYEKLVAHGHVYTRPGAGFFI 95 I ++ EGV L GD+LPS+R + S VS TV +AY L A G + R +G+++ Sbjct: 11 IALSIQEGV----LRLGDRLPSVRQASASRDVSPSTVFQAYYLLEARGLIRARERSGYYV 66 Query: 96 RVD--------NQVANAQTPAVPAPLLTNWRQRLLDPRTLLHRGLGSGDLPPDWLNVPQL 147 D Q + + P + + L + LGS P + +L Sbjct: 67 VGDVRKLPPEPEQASQPDEDSSPVDISELVFEVLESSKMRDVVPLGSAFPSPLLFPLARL 126 Query: 148 AATLRAVSRSNINWAAGYGDAQGYLPLRQQLQRKLADIGIDVTPRQVLTTLGATDAINLI 207 A + + + W+ G LR+Q+ + G+ V P +++ T GA DA+NL Sbjct: 127 AKAMASSVQQLDPWSTVDDLTPGNPQLRRQIALRYRADGLHVQPDEIVITNGALDALNLC 186 Query: 208 VMSYLRQPGMTVLVDDPGSFLLMDRLLASGMHIIGV-TRDADGPDITALQNACEQHGPAF 266 +++ R PG VLV+ P + + L +G+ I V T +G D+ AL E+H P Sbjct: 187 LIAVTR-PGDAVLVESPTFYAALQSLERNGLQAIEVPTHPREGMDLAALARVLERHQPKA 245 Query: 267 YFCQSLLHSPGYTGLSPQRAFQILRLAERFNFTIVEDDTYGDLAPVHRPPHATRLASLDQ 326 + + +P + + ++ ++ L + + ++EDD YG+L + P + + D Sbjct: 246 CWLMTNFQNPLGSLMPDEKKRDLVALLSQHDIPLIEDDVYGELYFGDKRPAPAK--AYDT 303 Query: 327 LQHVLYVGSFSKTLGAGMRVGFIAGNPQQIEWLLLYKLVSRASNGSLAERMIYRLLSEGG 386 V++ SFSK L G RVG+ A + + +KL + + + A+ + L +GG Sbjct: 304 KGLVMHCSSFSKCLAPGYRVGWAAPG-RYTRAVARHKLTTTLAASAPAQAALATYLEKGG 362 Query: 387 YRRHCEQLRARLDQARPRLMAALEALGI--VLQHRPDAGLYLWGRLPGDLNAMEVAERML 444 Y RH QLR L + + M A+ RP G +LW LP +NA+ + + L Sbjct: 363 YDRHLRQLRHTLALQQTQFMEAIARYFPPGTQATRPRGGYFLWVELPHAVNALTLHRQAL 422 Query: 445 ANGYLTAPGPVFSSGEAARSHMRFNVASSDD 475 ++G APGP+FS+ + + +R N + D Sbjct: 423 SHGISIAPGPIFSAHQGFTNCIRLNYGHAWD 453 >gi|134094032|ref|YP_001099107.1| putative aminotransferase [Herminiimonas arsenicoxydans] Length = 397 Score = 106 bits (265), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 82/349 (23%), Positives = 153/349 (43%), Gaps = 9/349 (2%) Query: 134 SGDLP-PDWLNVPQLAATLRAVSRSNINWAAGYGDAQGYLPLRQQLQRKLADIGIDVTPR 192 +G LP P+ V + A V A YG + GY PLR+ + L+ G+ +TP Sbjct: 41 AGGLPSPETFPVEHMKAAFDTVLSQQGKIALQYGPSDGYAPLREWIADSLSIPGVTITPD 100 Query: 193 QVLTTLGATDAINLIVMSYLRQPGMTVLVDDPGSFLLMDRLLASGMHIIGVTRDADGPDI 252 QVL G+ A++L+ L + VLV+ P + + + D G + Sbjct: 101 QVLMVSGSQQALDLL-GKVLIEEHSKVLVETPSYLGALQAFSVYQPEFVSIPTDDFG--L 157 Query: 253 TALQNACEQHGPAFYFCQSLLHSPGYTGLSPQRAFQILRLAERFNFTIVEDDTYGDLAPV 312 + A G + +P +S +R F ++ R ++EDD YG L+ Sbjct: 158 LPEEVAKIADGARLLYALPNFQNPTGRTMSVERRFALVETCARLGLPLIEDDPYGALS-- 215 Query: 313 HRPPHATRLASLDQLQHVLYVGSFSKTLGAGMRVGFIAGNPQQIEWLLLYKLVSRASNGS 372 +R ++ +++ V+Y+GSFSK L G+R+G++ + L K + Sbjct: 216 YRGEPLPKMLTMNP-NGVIYLGSFSKVLTPGIRLGYVVAPVPLVRKLEQAKQAADLHTSQ 274 Query: 373 LAERMIYRLLSEGGYRRHCEQLRARL-DQARPRLMAALEALGI-VLQHRPDAGLYLWGRL 430 L + ++Y + +G +H +R +Q + L A E V ++P+ G+++W L Sbjct: 275 LTQMVVYEAIKDGFLEKHIPSIRTLYANQCQVMLDALTEFFPAGVTWNKPEGGMFIWVTL 334 Query: 431 PGDLNAMEVAERMLANGYLTAPGPVFSSGEAARSHMRFNVASSDDDALR 479 P ++ M++ E + PG F + E ++ +R + + + +R Sbjct: 335 PEHIDCMKLLEESITQNVAFVPGAPFYANEPQKNTLRLSFVTVPPEKIR 383 >gi|134093921|ref|YP_001098996.1| MocR family transcriptional regulator [Herminiimonas arsenicoxydans] Length = 469 Score = 81.6 bits (200), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 91/330 (27%), Positives = 159/330 (48%), Gaps = 17/330 (5%) Query: 25 DKHSARLLVDRIFTAVLEGVRTRRLAHGDKLPSLRVVAESAQVSRDTVARAYEKLVAHGH 84 D+ + L ++I ++ + + LA G +LPS + +A V+R TV AYE+L Sbjct: 10 DRTAKLSLSEQICVSICRAIESGLLAPGTRLPSWQGLAAQLGVARGTVQAAYERLSDSQM 69 Query: 85 VYTRPGAGFFI--RVDNQVANAQTPAVPAPLLTNWRQRLLDPRTLLHRGLGSGDLPPDWL 142 + T G + R+ + P P + +++ + P + G+ + + PD L Sbjct: 70 IETFGAKGTRVAPRLHTTAGKPEAPQ-PGAFMKTYQEMMAGP-AIFQLGIPAMEGFPDKL 127 Query: 143 NVPQLAATL-RAVSRSNINWAAGYGDAQGYLPLRQQLQRKLA-DIGIDVTPRQVLTTLGA 200 ++ L + S S++ Y D +G + LR+++ L+ + P QV T G Sbjct: 128 FARARSSNLLKTGSFSSLV----YPDPRGEIELRKEVAGYLSISRNLHCFPEQVFITSGY 183 Query: 201 TDAINLIVMSYLRQPGMTVLVDDPGSFLLMDRLLASGMHIIGVTRDADGPDIT-ALQNAC 259 + + L++ G V +++PG L L + ++I+ V DA+G D+ ++NA Sbjct: 184 SSGLGLVLRVLGLD-GRKVWMEEPGFLLTRKGLELARLNIVPVPVDAEGLDVDYGIKNAA 242 Query: 260 EQHGPAFYFCQSLLHSPGYTGLSPQRAFQILRLAERFNFTIVEDDTYGDLAPVHRPPHAT 319 + A +P T LS +R Q+L A N I+EDD +L RP A Sbjct: 243 DA---ALAVVTPGQQAPLGTTLSLRRRLQLLEWAAANNAWIIEDDYLSELQLEGRP--AP 297 Query: 320 RLASLDQLQHVLYVGSFSKTLGAGMRVGFI 349 LASLD+ + V+++GSFSKT+ G+R+GF+ Sbjct: 298 ALASLDEGKRVIHIGSFSKTISPGLRLGFV 327 Database: BlastDatabases/690/690 Posted date: Apr 9, 2011 4:48 AM Number of letters in database: 1,000,347 Number of sequences in database: 3295 Lambda K H 0.322 0.136 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 3295 Number of Hits to DB: 953,047 Number of extensions: 41183 Number of successful extensions: 131 Number of sequences better than 1.0e-08: 4 Number of HSP's gapped: 116 Number of HSP's successfully gapped: 4 Length of query: 491 Length of database: 1,000,347 Length adjustment: 85 Effective length of query: 406 Effective length of database: 720,272 Effective search space: 292430432 Effective search space used: 292430432 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 131 (55.1 bits)